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Zhang Z and Dietrich FS  (2005) Identification and characterization of upstream open reading frames (uORF) in the 5' untranslated regions (UTR) of genes in Saccharomyces cerevisiae. Curr Genet 48(2):77-87

Abstract: We have taken advantage of recently sequenced hemiascomycete fungal genomes to computationally identify additional genes potentially regulated by upstream open reading frames (uORFs). Our approach is based on the observation that the structure, including the uORFs, of the post-transcriptionally uORF regulated Saccharomyces cerevisiae genes GCN4 and CPA1 is conserved in related species. Thirty-eight candidate genes for which uORFs were found in multiple species were identified and tested. We determined by 5' RACE that 15 of these 38 genes are transcribed. Most of these 15 genes have only a single uORF in their 5' UTR, and the length of these uORFs range from 3 to 24 codons. We cloned seven full-length UTR sequences into a luciferase (LUC) reporter system. Luciferase activity and mRNA level were compared between the wild-type UTR construct and a construct where the uORF start codon was mutated. The translational efficiency index (TEI) of each construct was calculated to test the possible regulatory function on translational level. We hypothesize that uORFs in the UTR of RPC11, TPK1, FOL1, WSC3, and MKK1 may have translational regulatory roles while uORFs in the 5' UTR of ECM7 and IMD4 have little effect on translation under the conditions tested.

Status: Published Type: Journal Article PubMed ID: 16012843

Topics addressed in this paper

Number of different genes curated to this paper: 18

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Topics Genes linked to topics (#1 - 10 )
APC2 ARV1 AVT2 CPA1 ECM7 FOL1 GCN4 HAP4 HEM3 IMD4
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Regulation of blue ball blue ball blue ball
RNA Levels and Processing blue ball blue ball blue ball
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Topics Genes linked to topics (#11 - 18 )
MBR1 MKK1 RPC11 SLM2 SPE4 SPH1 TPK1 WSC3
Additional Literature blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball blue ball blue ball blue ball
Regulation of blue ball blue ball blue ball blue ball
RNA Levels and Processing blue ball blue ball blue ball blue ball
Strains/Constructs blue ball blue ball blue ball blue ball

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