Bean JM, et al. (2005) High functional overlap between MluI cell-cycle box binding factor and Swi4/6 cell-cycle box binding factor in the G1/S transcriptional program in Saccharomyces cerevisiae. Genetics 171(1):49-61
Abstract: In budding yeast, many genes are induced early in the cell cycle. Induction of these genes has been predominantly attributed to two transcription factors, Swi4-Swi6 (SBF) and Mbp1-Swi6 (MBF). Swi4 and Mbp1 are related DNA-binding proteins with dissimilar target sequences. For most G1/S-regulated genes that we tested in a cdc20 block-release protocol for cell cycle synchronization, removal of both Swi4 and Mbp1 was necessary and sufficient to essentially eliminate cell-cycle-regulated expression. Neither detectable SBF nor MBF binding sites (SCBs or MCBs) in the promoters nor available genome-wide promoter occupancy data consistently explain this functional overlap. The overlapping ability of these transcription factors to regulate many promoters with very similar cell-cycle kinetics may provide robustness to the G1/S transcriptional response, but poses a puzzle with respect to promoter-transcription factor specificity. In addition, for some genes, deletion of Mbp1 or Swi4 enhances transcription, suggesting these factors can also function as transcriptional repressors. Finally, we observe residual G1/S transcriptional regulation in the absence of Swi4 and Mbp1.
| Status: Published | Type: Journal Article | PubMed ID: 15965243 |
Topics addressed in this paper
Number of different genes curated to this paper: 30
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| Topics | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CDC21 | CDC45 | CDC6 | CLB2 | CLB5 | CLN2 | CLN3 | CWP1 | DUN1 | ELO1 | |
| Additional Literature | | | | | | | | | ||
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| Protein-Nucleic Acid Interactions | | | ||||||||
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| Transcription | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| ERP3 | EXG1 | HCM1 | HTA2 | MBP1 | MSB2 | PCL2 | PLM2 | PUP3 | RAD27 | |
| Additional Literature | | | | | | | | | | |
| Cell Cycle Phase Involved | | |||||||||
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| Regulation of | | | | | | | | | | |
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| Transcription | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RNR1 | SIC1 | SIM1 | SPT21 | SWI4 | SWI5 | SWI6 | TOS4 | YHP1 | YOX1 | |
| Additional Literature | | | | | | | | |||
| Cell Cycle Phase Involved | | |||||||||
| Cellular Location | | |||||||||
| DNA/RNA Sequence Features | | | ||||||||
| Function/Process | | | ||||||||
| Genetic Interactions | | |||||||||
| Mutants/Phenotypes | | |||||||||
| Primary Literature | | | | |||||||
| Protein-Nucleic Acid Interactions | | | | |||||||
| Regulation of | | | | | | | | | ||
| Regulatory Role | | | ||||||||
| Strains/Constructs | | |||||||||
| Transcription | | | | | | | | | ||




