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Terashima H, et al.  (2002) Sequence-based approach for identification of cell wall proteins in Saccharomyces cerevisiae. Curr Genet 40(5):311-6

Abstract: Open reading frames (ORFs) in the genome of Saccharomyces cerevisiae were screened for cell wall proteins and extracellular proteins, using an in silico sequence analysis combined with biochemical examination. The selection criteria used in the sequence analysis were the presence of a signal sequence for secretion and the absence of any targeting and retention signal to/in intracellular components. By using the PSORT II program, 163 ORFs/proteins were selected as potential extracellular proteins, including cell wall proteins. Of these, 51 ORFs/proteins of unknown localization and more than 120 amino acids in size were further studied on their cellular localization. A hemagglutinin (HA) epitope was inserted in the most C-terminus of each protein and the resulting HA-tagged protein was expressed under the authentic promoter in yeast cells. Out of the 51 constructs, 35 gave protein bands on Western blots. Examination of proteins in fractionated samples identified 11 extracellular proteins; six proteins that were weakly associated with the cell wall and five proteins that were relatively tightly associated with the cell wall.

Status: Published Type: Journal Article PubMed ID: 11935221

Topics addressed in this paper

Number of different genes curated to this paper: 35

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Topics Genes linked to topics (#1 - 10 )
CWC23 DIA3 DSE2 DSE4 EAR1 ERJ5 GMC1 GRX7 HPF1 MNL1
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Topics Genes linked to topics (#11 - 20 )
PAN5 PGU1 PRY1 PRY2 SLP1 SPC25 SRL1 SVS1 TOS1 VEL1
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Topics Genes linked to topics (#21 - 30 )
YCL049C YCR101C YDL121C YDR056C YDR262W YER076C YHR202W YHR214W YJL132W YNR066C
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Topics Genes linked to topics (#31 - 35 )
YOL159C YOR152C YOR387C YPL277C ZPS1
Cellular Location blue ball blue ball blue ball blue ball blue ball
Primary Literature blue ball blue ball blue ball blue ball blue ball
Protein Sequence Features blue ball
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