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Hani J and Feldmann H (1998) tRNA genes and retroelements in the yeast genome. Nucleic Acids Res 26(3):689-96
Abstract: A survey of tRNA genes and retroelements (Ty) in the genome of the yeast Saccharomyces cerevisiae is presented. Aspects of genomic organization and evolution of these genetic entities and their interplay are discussed. Attention is also given to the relationship between tRNA gene multiplicity and codon selection in yeast and the role of Ty elements.
| Status: Published | Type: Journal Article | PubMed ID: 9443958 |
Topics addressed in this paper
Number of different genes curated to this paper: 274
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| Topics | Topics not linked to Genes | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CDC65 | EMT1 | EMT2 | EMT3 | EMT4 | EMT5 | HSX1 | IMT1 | IMT2 | IMT3 | ||
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| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| IMT4 | SOE1 | SUF1 | SUF10 | SUF11 | SUF16 | SUF17 | SUF2 | SUF20 | SUF3 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SUF4 | SUF5 | SUF6 | SUF7 | SUF8 | SUF9 | SUP11 | SUP16 | SUP17 | SUP19 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
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| Topics | Genes linked to topics (#31 - 40 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SUP2 | SUP3 | SUP4 | SUP5 | SUP51 | SUP53 | SUP54 | SUP56 | SUP6 | SUP61 | |
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| DNA/RNA Sequence Features | | | | | | | | | | |
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| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#41 - 50 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SUP7 | SUP8 | tA(AGC)D | tA(AGC)F | tA(AGC)G | tA(AGC)H | tA(AGC)J | tA(AGC)K1 | tA(AGC)K2 | tA(AGC)L | |
| DNA/RNA Sequence Features | | | | | | | | | | |
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| Topics | Genes linked to topics (#51 - 60 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tA(AGC)M1 | tA(AGC)M2 | tA(AGC)P | tA(UGC)A | tA(UGC)E | tA(UGC)G | tA(UGC)L | tA(UGC)O | tC(GCA)B | tC(GCA)G | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
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| Topics | Genes linked to topics (#61 - 70 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tC(GCA)P1 | tC(GCA)P2 | tD(GUC)B | tD(GUC)D | tD(GUC)G1 | tD(GUC)G2 | tD(GUC)I1 | tD(GUC)I2 | tD(GUC)J1 | tD(GUC)J2 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
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| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#71 - 80 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tD(GUC)J3 | tD(GUC)J4 | tD(GUC)K | tD(GUC)L1 | tD(GUC)L2 | tD(GUC)M | tD(GUC)N | tD(GUC)O | tE(CUC)D | tE(CUC)I | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#81 - 90 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tE(UUC)B | tE(UUC)C | tE(UUC)E1 | tE(UUC)E2 | tE(UUC)E3 | tE(UUC)G2 | tE(UUC)G3 | tE(UUC)I | tE(UUC)J | tE(UUC)K | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
Jump to Summary Chart for:
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The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
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| Topics | Genes linked to topics (#91 - 100 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tE(UUC)L | tE(UUC)M | tE(UUC)P | tF(GAA)B | tF(GAA)D | tF(GAA)F | tF(GAA)G | tF(GAA)H1 | tF(GAA)H2 | tF(GAA)M | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#101 - 110 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tF(GAA)N | tF(GAA)P1 | tF(GAA)P2 | tG(GCC)B | tG(GCC)D1 | tG(GCC)D2 | tG(GCC)E | tG(GCC)F2 | tG(GCC)G1 | tG(GCC)G2 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#111 - 120 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tG(GCC)J1 | tG(GCC)J2 | tG(GCC)M | tG(GCC)O1 | tG(GCC)P1 | tG(GCC)P2 | tH(GUG)E1 | tH(GUG)E2 | tH(GUG)G1 | tH(GUG)G2 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#121 - 130 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tH(GUG)H | tH(GUG)K | tH(GUG)M | tI(AAU)B | tI(AAU)D | tI(AAU)E1 | tI(AAU)E2 | tI(AAU)G | tI(AAU)I1 | tI(AAU)I2 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#131 - 140 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tI(AAU)L1 | tI(AAU)L2 | tI(AAU)N1 | tI(AAU)N2 | tI(AAU)P1 | tI(AAU)P2 | tI(UAU)D | tI(UAU)L | tK(CUU)D1 | tK(CUU)D2 | |
| DNA/RNA Sequence Features | | | | | | | | | ||
| Function/Process | | | | | | | | | ||
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#141 - 150 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tK(CUU)E1 | tK(CUU)E2 | tK(CUU)F | tK(CUU)G1 | tK(CUU)G2 | tK(CUU)G3 | tK(CUU)I | tK(CUU)J | tK(CUU)K | tK(CUU)M | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#151 - 160 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tK(CUU)P | tK(UUU)D | tK(UUU)G1 | tK(UUU)G2 | tK(UUU)K | tK(UUU)L | tK(UUU)O | tK(UUU)P | tL(CAA)D | tL(CAA)G1 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#161 - 170 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tL(CAA)G3 | tL(CAA)K | tL(CAA)L | tL(CAA)M | tL(CAA)N | tL(GAG)G | tL(UAA)B1 | tL(UAA)B2 | tL(UAA)D | tL(UAA)K | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#171 - 180 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tL(UAA)L | tL(UAA)N | tL(UAG)J | tL(UAG)L1 | tL(UAG)L2 | tM(CAU)C | tN(GUU)C | tN(GUU)F | tN(GUU)G | tN(GUU)K | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#181 - 190 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tN(GUU)L | tN(GUU)N1 | tN(GUU)N2 | tN(GUU)O1 | tN(GUU)O2 | tN(GUU)P | tP(UGG)L | tP(UGG)N1 | tP(UGG)N2 | tP(UGG)O1 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#191 - 200 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tP(UGG)O3 | tQ(UUG)B | tQ(UUG)C | tQ(UUG)D1 | tQ(UUG)D2 | tQ(UUG)D3 | tQ(UUG)E1 | tQ(UUG)E2 | tQ(UUG)H | tQ(UUG)L | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#201 - 210 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tR(ACG)D | tR(ACG)E | tR(ACG)J | tR(ACG)K | tR(ACG)L | tR(ACG)O | tR(UCU)B | tR(UCU)D | tR(UCU)E | tR(UCU)G1 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#211 - 220 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tR(UCU)G2 | tR(UCU)G3 | tR(UCU)J1 | tR(UCU)J2 | tR(UCU)K | tR(UCU)M1 | tR(UCU)M2 | TRN1 | TRR4 | TRT2 | |
| Additional Literature | | |||||||||
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | | | | | | | | | |
| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#221 - 230 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tS(AGA)A | tS(AGA)B | tS(AGA)D1 | tS(AGA)D2 | tS(AGA)D3 | tS(AGA)E | tS(AGA)G | tS(AGA)H | tS(AGA)J | tS(AGA)L | |
| DNA/RNA Sequence Features | | | | | | | | | | |
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| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#231 - 240 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tS(AGA)M | tS(GCU)F | tS(GCU)O | tT(AGU)B | tT(AGU)C | tT(AGU)D | tT(AGU)H | tT(AGU)I1 | tT(AGU)I2 | tT(AGU)J | |
| DNA/RNA Sequence Features | | | | | | | | | | |
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| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#241 - 250 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tT(AGU)N1 | tT(AGU)N2 | tT(AGU)O1 | tT(AGU)O2 | tT(UGU)G1 | tT(UGU)G2 | tT(UGU)H | tT(UGU)P | tV(AAC)E1 | tV(AAC)E2 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
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| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#251 - 260 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tV(AAC)G1 | tV(AAC)G2 | tV(AAC)G3 | tV(AAC)H | tV(AAC)J | tV(AAC)K1 | tV(AAC)K2 | tV(AAC)L | tV(AAC)M1 | tV(AAC)M2 | |
| DNA/RNA Sequence Features | | | | | | | | | | |
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| Primary Literature | | | | | | | | | | |
| Topics | Genes linked to topics (#261 - 270 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tV(AAC)M3 | tV(AAC)O | tV(CAC)D | tV(CAC)H | tV(UAC)B | tV(UAC)D | tW(CCA)G1 | tW(CCA)G2 | tW(CCA)J | tW(CCA)K | |
| DNA/RNA Sequence Features | | | | | | | | | | |
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| Topics | Genes linked to topics (#271 - 274 ) | |||
|---|---|---|---|---|
| tW(CCA)M | tW(CCA)P | tX(XXX)D | tX(XXX)L | |
| DNA/RNA Sequence Features | | | | |
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