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Lombardia LJ, et al.  (2002) Genome-wide analysis of yeast transcription upon calcium shortage. Cell Calcium 32(2):83-91

Abstract: Several regulatory circuits related to important functions, like membrane excitation, immunoresponse, replication, control of the cell cycle and differentiation, among others, cause an increase in intracellular calcium level that finally has a consequence upon transcription of specific genes. The sequencing of the whole genome of eukaryotic cells enables genome-wide analysis of gene expression under many conditions not yet assessed by conventional methods. Using the array technology, the effect of calcium shortage in yeast cells was studied. Correspondence analysis of data showed that there is a response in transcription that is correlated to calcium shortage. The distribution of up-regulated-genes in functional categories suggests a regulatory connection between the cell-cycle progression and the energetic metabolic requirements for growth and division. In silico analysis of promoters reveals the frequent appearance of the Mlu I cell cycle box (MCB) cis element that binds the transcriptional regulatory factor Mcm1.

Status: Published Type: Journal Article PubMed ID: 12161108

Topics addressed in this paper

Number of different genes curated to this paper: 108

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ANR2 APP1 ARC40 BAP3 BDF1 BIO4 CDC14 CDC24 CDC6 CHS6
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Genomic expression study yg ball
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Topics Genes linked to topics (#11 - 20 )
CIS3 CPA1 CPA2 CSM3 CTR1 CUE4 CYC1 DCW1 DUR1,2 ECM11
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Topics Genes linked to topics (#21 - 30 )
ELM1 ERG1 ESP1 FAR1 FBA1 FLC3 FLD1 FSH3 GPA1 GRX1
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Topics Genes linked to topics (#31 - 40 )
HSP150 IBA57 IDS2 ILV2 ILV3 IML1 ISF1 JJJ2 KRE1 LSB5
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Topics Genes linked to topics (#41 - 50 )
MCM1 MES1 MIG3 MOT3 MPE1 NEM1 NNF1 NUP120 NUP57 OSM1
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Function/Process blue ball
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Topics Genes linked to topics (#51 - 60 )
PAU10 PDR3 PET100 PFD1 PIL1 PMA1 RAD10 RBA50 REE1 RPA12
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Topics Genes linked to topics (#61 - 70 )
RPA135 RSM7 SAP185 SED1 SET2 SFH5 SHE4 SNP1 STB6 STE4
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Topics Genes linked to topics (#71 - 80 )
TCD1 TOA2 TRS31 TSL1 TUL1 URA3 URB2 VMA5 VPS70 YBL111C
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Topics Genes linked to topics (#81 - 90 )
YBR016W YCL020W YDR133C YDR209C YDR210W YEL075C YER034W YFL034W YFL067W YIL060W
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Topics Genes linked to topics (#91 - 100 )
YIL151C YJL147C YJR027W YJR028W YJR039W YJR124C YJR128W YKL070W YKL153W YML002W
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Topics Genes linked to topics (#101 - 108 )
YML040W YML045W YML089C YMR018W YMR046C YMR051C YPR202W YRF1-5
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