SGD Paper Help



Bohm S, et al.  (1997) Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 25(12):2464-9

Abstract: The PROSITE pattern Zinc_Finger_C2H2 was extended to permit the detection of all C2H2 zinc fingers and their parent proteins in the recently completed sequence of the yeast genome. Additionally, a new computer program was written that extracts other zinc binding motifs (non C2H2 'fingers'), overlapping with the classical zinc finger pattern, from the found set of yeast C2H2 fingers. The complete and correct detection of all fingers is a prerequisite for the classification of the yeast zinc finger proteins in functional terms. The detected 53 yeast C2H2 zinc finger proteins do not contain finger clusters with 10 or more repeats, as is frequently found in higher eukaryotes. Only three proteins contain four or more fingers in a cluster. Moreover, nearly all 27 yeast proteins with tandem arrays of two or three finger domains can be classified into nine subgroups with high sequence conservation in their finger clusters, in particular of their DNA recognition helices. These results and application of the recently elaborated finger/DNA recognition rules suggest that the yeast proteins belonging to the same subgroup may recognize identical or very similar DNA sites.

Status: Published Type: Journal Article PubMed ID: 9171100

Topics addressed in this paper

Number of different genes curated to this paper: 53

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Topics Genes linked to topics (#1 - 10 )
ACE2 ADR1 AZF1 BRE4 BUD20 CMR3 CRZ1 FZF1 GIS1 IRC2
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Topics Genes linked to topics (#11 - 20 )
JJJ1 MET31 MET32 MIG1 MIG2 MIG3 MOT3 MSN2 MSN4 NRG1
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Topics Genes linked to topics (#21 - 30 )
NRG2 OTU1 PEP7 PPS1 PRP11 PRP9 PZF1 RAD18 REH1 RGM1
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Protein Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#31 - 40 )
RIM1 RME1 RPH1 RSF2 RTS2 SAS2 SAS3 SET5 SFP1 SNU23
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Topics Genes linked to topics (#41 - 50 )
STP1 STP2 STP3 STP4 SWI5 TDA9 USV1 VMS1 YER130C YGR067C
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Topics Genes linked to topics (#51 - 53 )
YPR015C YPR022C ZAP1
Additional Literature blue ball blue ball
Primary Literature blue ball
Protein Sequence Features blue ball blue ball blue ball
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