SER3/YER081W Literature Guide Help

Other names published for SER3: phosphoglycerate dehydrogenase SER3, YER081W

SER3 - All Curated References (44)

ReferenceOther Genes Addressed
Otero JM, et al.  (2013) Industrial systems biology of Saccharomyces cerevisiae enables novel succinic acid cell factory. PLoS One 8(1):e54144
Picotti P, et al.  (2013) A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis. Nature 494(7436):266-70
Hainer SJ, et al.  (2012) Identification of Mutant Versions of the Spt16 Histone Chaperone That Are Defective for Transcription-Coupled Nucleosome Occupancy in Saccharomyces cerevisiae. G3 (Bethesda) 2(5):555-67
Ljungdahl PO and Daignan-Fornier B  (2012) Regulation of Amino Acid, Nucleotide, and Phosphate Metabolism in Saccharomyces cerevisiae. Genetics 190(3):885-929
Llopis S, et al.  (2012) Transcriptomics in human blood incubation reveals the importance of oxidative stress response in Saccharomyces cerevisiae clinical strains. BMC Genomics 13(1):419
Ma Z, et al.  (2012) Multiple roles for the Ess1 prolyl isomerase in the RNA polymerase II transcription cycle. Mol Cell Biol 32(17):3594-607
Massoni A, et al.  (2012) Proteome analysis of a CTR9 deficient yeast strain suggests that Ctr9 has function(s) independent of the Paf1 complex. Biochim Biophys Acta 1824(5):759-68
Costenoble R, et al.  (2011) Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics. Mol Syst Biol 7():464
Danford T, et al.  (2011) Discovering regulatory overlapping RNA transcripts. J Comput Biol 18(3):295-303
Hainer SJ and Martens JA  (2011) Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy. Mol Cell Biol 31(17):3557-68
Hainer SJ, et al.  (2011) Intergenic transcription causes repression by directing nucleosome assembly. Genes Dev 25(1):29-40
Holbein S, et al.  (2011) The P-Loop Domain of Yeast Clp1 Mediates Interactions Between CF IA and CPF Factors in Pre-mRNA 3' End Formation. PLoS One 6(12):e29139
Pruneski JA, et al.  (2011) The Paf1 complex represses SER3 transcription in Saccharomyces cerevisiae by facilitating intergenic transcription-dependent nucleosome occupancy of the SER3 promoter. Eukaryot Cell 10(10):1283-94
Thebault P, et al.  (2011) Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II. Mol Cell Biol 31(6):1288-300
Tisseur M, et al.  (2011) Pervasive transcription - Lessons from yeast. Biochimie 93(11):1889-96
Gullerova M and Proudfoot NJ  (2010) Transcriptional interference and gene orientation in yeast: noncoding RNA connections. Cold Spring Harb Symp Quant Biol 75():299-311
Gopalacharyulu PV, et al.  (2009) Dynamic network topology changes in functional modules predict responses to oxidative stress in yeast. Mol Biosyst 5(3):276-87
Harrison BR, et al.  (2009) Life without RNAi: noncoding RNAs and their functions in Saccharomyces cerevisiae. Biochem Cell Biol 87(5):767-79
Jacquier A  (2009) The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat Rev Genet 10(12):833-844
Kennedy CJ, et al.  (2009) Systems-level engineering of nonfermentative metabolism in yeast. Genetics 183(1):385-97
Richard P and Manley JL  (2009) Transcription termination by nuclear RNA polymerases. Genes Dev 23(11):1247-69
Dikicioglu D, et al.  (2008) Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae. Appl Environ Microbiol 74(18):5809-16
Durek P and Walther D  (2008) The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Syst Biol 2(1):100
Ito T, et al.  (2008) Unexpected complexity of the budding yeast transcriptome. IUBMB Life 60(12):775-81
Castrillo JI, et al.  (2007) Growth control of the eukaryote cell: a systems biology study in yeast. J Biol 6(2):4
Lu P, et al.  (2007) Global metabolic changes following loss of a feedback loop reveal dynamic steady states of the yeast metabolome. Metab Eng 9(1):8-20
Satish Kumar V, et al.  (2007) Optimization based automated curation of metabolic reconstructions. BMC Bioinformatics 8:212
Thompson DM and Parker R  (2007) Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae. Mol Cell Biol 27(1):92-101
de Groot MJ, et al.  (2007) Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes. Microbiology 153(Pt 11):3864-3878
David L, et al.  (2006) A high-resolution map of transcription in the yeast genome. Proc Natl Acad Sci U S A 103(14):5320-5