RPO21/YDL140C Literature Guide Help

Other names published for RPO21: RPB1, RPB220, SUA8, B220, YDL140C

RPO21 - Substrates/Ligands/Cofactors (42)

ReferenceOther Genes Addressed
Kaplan CD, et al.  (2012) Dissection of Pol II Trigger Loop Function and Pol II Activity-Dependent Control of Start Site Selection In Vivo. PLoS Genet 8(4):e1002627
Kellinger MW, et al.  (2012) 5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription. Nat Struct Mol Biol 19(8):831-3
Kellinger MW, et al.  (2012) Dissecting chemical interactions governing RNA polymerase II transcriptional fidelity. J Am Chem Soc 134(19):8231-40
Zamft B, et al.  (2012) Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases. Proc Natl Acad Sci U S A 109(23):8948-53
Cheung AC and Cramer P  (2011) Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 471(7337):249-53
Cheung AC, et al.  (2011) Structural basis of initial RNA polymerase II transcription. EMBO J 30(23):4755-63
Peil K, et al.  (2011) Uniform distribution of elongating RNA polymerase II complexes in transcribed gene locus. J Biol Chem 286(27):23817-22
Ruan W, et al.  (2011) Evolution of two modes of intrinsic RNA polymerase transcript cleavage. J Biol Chem 286(21):18701-7
Looke M, et al.  (2010) Relicensing of transcriptionally inactivated replication origins in budding yeast. J Biol Chem 285(51):40004-11
Ohtsuki K, et al.  (2010) Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters. Nucleic Acids Res 38(6):1805-20
Damsma GE and Cramer P  (2009) Molecular basis of transcriptional mutagenesis at 8-oxoguanine. J Biol Chem 284(46):31658-63
Kireeva M, et al.  (2009) Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase. Methods 48(4):333-45
Kremer SB and Gross DS  (2009) SAGA and Rpd3 Chromatin Modification Complexes Dynamically Regulate Heat Shock Gene Structure and Expression. J Biol Chem 284(47):32914-31
Pelechano V, et al.  (2009) Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet 5(8):e1000614
Wang D, et al.  (2009) Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science 324(5931):1203-6
Brueckner F and Cramer P  (2008) Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation. Nat Struct Mol Biol 15(8):811-8
Cheng TF, et al.  (2008) Differential Blocking Effects of the Acetaldehyde-derived DNA Lesion N2-Ethyl-2'-deoxyguanosine on Transcription by Multisubunit and Single Subunit RNA Polymerases. J Biol Chem 283(41):27820-8
Kaplan CD, et al.  (2008) The RNA Polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin. Mol Cell 30(5):547-56
Damsma GE, et al.  (2007) Mechanism of transcriptional stalling at cisplatin-damaged DNA. Nat Struct Mol Biol 14(12):1127-33
Galburt EA, et al.  (2007) Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner. Nature 446(7137):820-3
Kashkina E, et al.  (2007) Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site. J Biol Chem 282(30):21578-82
Lehmann E, et al.  (2007) Molecular basis of RNA-dependent RNA polymerase II activity. Nature 450(7168):445-9
Kettenberger H, et al.  (2006) Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs. Nat Struct Mol Biol 13(1):44-8
Wang D, et al.  (2006) Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis. Cell 127(5):941-54
Nair D, et al.  (2005) Mediator and TFIIH govern carboxyl-terminal domain-dependent transcription in yeast extracts. J Biol Chem 280(40):33739-48
Kotovic KM, et al.  (2003) Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol Cell Biol 23(16):5768-79
Mondal N, et al.  (2003) Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity. Nucleic Acids Res 31(17):5016-24
Gauthier L, et al.  (2002) The role of the carboxyterminal domain of RNA polymerase II in regulating origins of DNA replication in Saccharomyces cerevisiae. Genetics 162(3):1117-29
Komissarova N, et al.  (2002) Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination. Mol Cell 10(5):1151-62
Sun L, et al.  (2002) Physical association of the APIS complex and general transcription factors. Biochem Biophys Res Commun 296(4):991-9