RAP1/YNL216W Literature Guide Help

Other names published for RAP1: GRF1, TBA1, TUF1, YNL216W

RAP1 LITERATURE TOPICS

RAP1 - Substrates/Ligands/Cofactors (58)

Results: 1 - 30 of 58 records
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ReferenceOther Genes Addressed
Huebert DJ, et al.  (2012) Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators. Mol Cell Biol 32(9):1645-53
Matot B, et al.  (2012) The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA. Nucleic Acids Res 40(7):3197-207
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Smith DJ and Whitehouse I  (2012) Intrinsic coupling of lagging-strand synthesis to chromatin assembly.LID - 10.1038/nature10895 [doi] Nature ()
Zhang X, et al.  (2012) Functions of Protosilencers in the Formation and Maintenance of Heterochromatin in Saccharomyces cerevisiae. PLoS One 7(5):e37092
Ganapathi M, et al.  (2011) Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res 39(6):2032-44
Rhee HS and Pugh BF  (2011) Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell 147(6):1408-19
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Tsankov AM, et al.  (2010) The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8(7):e1000414
Mak HC, et al.  (2009) Dynamic reprogramming of transcription factors to and from the subtelomere. Genome Res 19(6):1014-25
Pelechano V, et al.  (2009) Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet 5(8):e1000614
Ye C, et al.  (2009) Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. PLoS Comput Biol 5(3):e1000311
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Holloway DT, et al.  (2007) Machine learning for regulatory analysis and transcription factor target prediction in yeast. Syst Synth Biol 1(1):25-46
Kasahara K, et al.  (2007) Assembly of Regulatory Factors on rRNA and Ribosomal Protein Genes in Saccharomyces cerevisiae. Mol Cell Biol 27(19):6686-6705
McCord RP, et al.  (2007) Inferring condition-specific transcription factor function from DNA binding and gene expression data. Mol Syst Biol 3():100
Sabourin M, et al.  (2007) Telomerase and Tel1p preferentially associate with short telomeres in S. cerevisiae. Mol Cell 27(4):550-61
Shida K  (2006) GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima. BMC Bioinformatics 7:486
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Casolari JM, et al.  (2004) Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization. Cell 117(4):427-39
Del Vescovo V, et al.  (2004) Distinct DNA elements contribute to Rap1p affinity for its binding sites. J Mol Biol 338(5):877-93
Yarragudi A, et al.  (2004) Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae. Mol Cell Biol 24(20):9152-64
Kepes F  (2003) Periodic epi-organization of the yeast genome revealed by the distribution of promoter sites. J Mol Biol 329(5):859-65
Wahlin J, et al.  (2003) DNA binding and telomere length regulation of yeast RAP1 homologues. J Mol Biol 332(4):821-33
Fourel G, et al.  (2002) General regulatory factors (GRFs) as genome partitioners. J Biol Chem 277(44):41736-43
Yan P, et al.  (2002) HBV C promoter Sp1 binding sequence functionally substitutes for the yeast ARS1 ABF1 binding site. DNA Cell Biol 21(10):737-42
Bi X and Broach JR  (1999) UASrpg can function as a heterochromatin boundary element in yeast. Genes Dev 13(9):1089-101
Fujiwara D, et al.  (1999) Molecular mechanism of the multiple regulation of the Saccharomyces cerevisiae ATF1 gene encoding alcohol acetyltransferase. Yeast 15(12):1183-97
Lascaris RF, et al.  (1999) DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences. Bioinformatics 15(4):267-77
Li B, et al.  (1999) Transcriptional elements involved in the repression of ribosomal protein synthesis. Mol Cell Biol 19(8):5393-404
Results: 1 - 30 of 58 records
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