ABF1/YKL112W Literature Guide Help

Other names published for ABF1: BAF1, OBF1, REB2, SBF1, YKL112W

ABF1 - Substrates/Ligands/Cofactors (74)

Results: 1 - 30 of 74 records
   1  2  3 
ReferenceOther Genes Addressed
Hansen L, et al.  (2012) Differences in local genomic context of bound and unbound motifs. Gene 506(1):125-34
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Smith DJ and Whitehouse I  (2012) Intrinsic coupling of lagging-strand synthesis to chromatin assembly.LID - 10.1038/nature10895 [doi] Nature ()
Vohradsky J  (2012) Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes. Nucleic Acids Res 40(15):7096-103
Zhang X, et al.  (2012) Functions of Protosilencers in the Formation and Maintenance of Heterochromatin in Saccharomyces cerevisiae. PLoS One 7(5):e37092
Ganapathi M, et al.  (2011) Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res 39(6):2032-44
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Tsankov AM, et al.  (2010) The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8(7):e1000414
Venkataram S and Fay JC  (2010) Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence? Genome Biol Evol 2():851-8
Woo DK, et al.  (2009) Multiple pathways of mitochondrial-nuclear communication in yeast: Intergenomic signaling involves ABF1 and affects a different set of genes than retrograde regulation. Biochim Biophys Acta 1789(2):135-45
Ye C, et al.  (2009) Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. PLoS Comput Biol 5(3):e1000311
Yu S, et al.  (2009) ABF1-binding Sites Promote Efficient Global Genome Nucleotide Excision Repair. J Biol Chem 284(2):966-73
Badis G, et al.  (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32(6):878-87
Yang Q, et al.  (2008) Rapid chip-based capillary electrophoretic mobility shift assay with negative pressure injection for the binding study of transcription factor Abf1 in Saccharomyces cerevisiae. Electrophoresis 29(24):5003-9
Holloway DT, et al.  (2007) Machine learning for regulatory analysis and transcription factor target prediction in yeast. Syst Synth Biol 1(1):25-46
McCord RP, et al.  (2007) Inferring condition-specific transcription factor function from DNA binding and gene expression data. Mol Syst Biol 3():100
Shida K  (2006) GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima. BMC Bioinformatics 7:486
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Miyake T, et al.  (2004) Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae. J Biol Chem 279(33):34865-72
Yarragudi A, et al.  (2004) Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae. Mol Cell Biol 24(20):9152-64
Fourel G, et al.  (2002) General regulatory factors (GRFs) as genome partitioners. J Biol Chem 277(44):41736-43
Valerius O, et al.  (2002) Multiple factors prevent transcriptional interference at the yeast ARO4-HIS7 locus. J Biol Chem 277(24):21440-5
Yan P, et al.  (2002) HBV C promoter Sp1 binding sequence functionally substitutes for the yeast ARS1 ABF1 binding site. DNA Cell Biol 21(10):737-42
Kohzaki H, et al.  (1999) Context-dependent modulation of replication activity of Saccharomyces cerevisiae autonomously replicating sequences by transcription factors. Mol Cell Biol 19(11):7428-35
Lascaris RF, et al.  (1999) DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences. Bioinformatics 15(4):267-77
Pryde FE and Louis EJ  (1999) Limitations of silencing at native yeast telomeres. EMBO J 18(9):2538-50
Feng L, et al.  (1998) Saccharomyces cerevisiae Cdc6 stimulates Abf1 DNA binding activity. J Biol Chem 273(3):1298-302
Pierce M, et al.  (1998) Transcriptional regulation of the SMK1 mitogen-activated protein kinase gene during meiotic development in Saccharomyces cerevisiae. Mol Cell Biol 18(10):5970-80
Schroeder SC and Weil PA  (1998) Biochemical and genetic characterization of the dominant positive element driving transcription ofthe yeast TBP-encoding gene, SPT15. Nucleic Acids Res 26(18):4186-95
Schroeder SC and Weil PA  (1998) Genetic tests of the role of Abf1p in driving transcription of the yeast TATA box bindng protein-encoding gene, SPT15. J Biol Chem 273(31):19884-91
Results: 1 - 30 of 74 records
   1  2  3