GCN4/YEL009C Literature Guide Help

Other names published for GCN4: AAS3, ARG9, AAS101, YEL009C

GCN4 - Substrates/Ligands/Cofactors (51)

Results: 1 - 30 of 51 records
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ReferenceOther Genes Addressed
Hansen L, et al.  (2012) Differences in local genomic context of bound and unbound motifs. Gene 506(1):125-34
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Vohradsky J  (2012) Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes. Nucleic Acids Res 40(15):7096-103
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Tsankov AM, et al.  (2010) The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8(7):e1000414
Azuma Y, et al.  (2009) Cobalt(II)-responsive DNA binding of a GCN4-bZIP protein containing cysteine residues functionalized with iminodiacetic acid. Angew Chem Int Ed Engl 48(37):6853-6
Ye C, et al.  (2009) Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. PLoS Comput Biol 5(3):e1000311
Hogan DJ, et al.  (2008) Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol 6(10):e255
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Rojas M, et al.  (2008) Selective inhibition of yeast regulons by daunorubicin: a transcriptome-wide analysis. BMC Genomics 9:358
Chan IS, et al.  (2007) The GCN4 bZIP targets noncognate gene regulatory sequences: quantitative investigation of binding at full and half sites. Biochemistry 46(6):1663-71
Holloway DT, et al.  (2007) Machine learning for regulatory analysis and transcription factor target prediction in yeast. Syst Synth Biol 1(1):25-46
McDonald RJ, et al.  (2007) DNA bending by charged peptides: electrophoretic and spectroscopic analyses. Biochemistry 46(9):2306-16
Dragan AI, et al.  (2004) Thermodynamic signature of GCN4-bZIP binding to DNA indicates the role of water in discriminating between the AP-1 and ATF/CREB sites. J Mol Biol 343(4):865-78
Guarnaccia C, et al.  (2004) DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domains. Nucleic Acids Res 32(17):4992-5002
Yarragudi A, et al.  (2004) Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae. Mol Cell Biol 24(20):9152-64
Kubota H, et al.  (2003) Rapamycin-induced translational derepression of GCN4 mRNA involves a novel mechanism for activation of the eIF2 alpha kinase GCN2. J Biol Chem 278(23):20457-60
Wang X, et al.  (2003) Thermodynamic characterization of the folding coupled DNA binding by the monomeric transcription activator GCN4 peptide. Biophys J 84(3):1867-75
Hollenbeck JJ, et al.  (2001) A GCN4 variant with a C-terminal basic region binds to DNA with wild-type affinity. Biochemistry 40(46):13833-9
Khandelwal P, et al.  (2001) Solution structure and dynamics of GCN4 cognate DNA: NMR investigations. Nucleic Acids Res 29(2):499-505
Tang Y, et al.  (2001) Stabilization of coiled-coil peptide domains by introduction of trifluoroleucine. Biochemistry 40(9):2790-6
Benevides JM, et al.  (2000) Protein-directed DNA structure II. Raman spectroscopy of a leucine zipper bZIP complex. Biochemistry 39(3):548-56
Deterding LJ, et al.  (2000) Molecular characterization of a tetramolecular complex between dsDNA and a DNA-binding leucine zipper peptide dimer by mass spectrometry. Bioconjug Chem 11(3):335-44
Hollenbeck JJ and Oakley MG  (2000) GCN4 binds with high affinity to DNA sequences containing a single consensus half-site. Biochemistry 39(21):6380-9
Jia MH, et al.  (2000) Global expression profiling of yeast treated with an inhibitor of amino acid biosynthesis, sulfometuron methyl. Physiol Genomics 3(2):83-92
Worn A, et al.  (2000) Correlation between in vitro stability and in vivo performance of anti-GCN4 intrabodies as cytoplasmic inhibitors. J Biol Chem 275(4):2795-803
Yu L and Morse RH  (1999) Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae. Mol Cell Biol 19(8):5279-88
Berger C, et al.  (1998) Diffusion-controlled DNA recognition by an unfolded, monomeric bZIP transcription factor. FEBS Lett 425(1):14-8
Strauss-Soukup JK and Maher LJ 3rd  (1998) Electrostatic effects in DNA bending by GCN4 mutants. Biochemistry 37(4):1060-6
Strauss-Soukup JK and Maher LJ 3rd  (1997) DNA bending by GCN4 mutants bearing cationic residues. Biochemistry 36(33):10026-32
Results: 1 - 30 of 51 records
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