VDE Literature Guide Help

Other names published for VDE: YDL184w-a, VDE1, YDL185W2, PI-SceI

VDE - Strains/Constructs (38)

Results: 1 - 30 of 38 records
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ReferenceOther Genes Addressed
Hiraishi H, et al.  (2008) Transcriptional regulation of Saccharomyces cerevisiae CYS3 encoding cystathionine gamma-lyase. Curr Genet 53(4):225-34
Senejani AG and Gogarten JP  (2007) Structural stability and endonuclease activity of a PI-SceI GFP-fusion protein. Int J Biol Sci 3(4):205-11
Brenzel S, et al.  (2006) Engineering artificially split inteins for applications in protein chemistry: biochemical characterization of the split Ssp DnaB intein and comparison to the split Sce VMA intein. Biochemistry 45(6):1571-8
Fukuda T, et al.  (2006) Investigation of the mechanism of meiotic DNA cleavage by VMA1-derived endonuclease uncovers a meiotic alteration in chromatin structure around the target site. Eukaryot Cell 5(6):981-90
Srikanth CV, et al.  (2005) Multiple cis-regulatory elements and the yeast sulphur regulatory network are required for the regulation of the yeast glutathione transporter, Hgt1p. Curr Genet 47(6):345-58
Mizutani R, et al.  (2004) Protein splicing of yeast VMA1-derived endonuclease via thiazolidine intermediates. J Synchrotron Radiat 11(Pt 1):109-12
Noel AJ, et al.  (2004) DNA recognition by the homing endonuclease PI-SceI involves a divalent metal ion cofactor-induced conformational change. J Biol Chem 279(8):6794-804
Steuer S, et al.  (2004) Chimeras of the homing endonuclease PI-SceI and the homologous Candida tropicalis intein: a study to explore the possibility of exchanging DNA-binding modules to obtain highly specific endonucleases with altered specificity. Chembiochem 5(2):206-13
Zeidler MP, et al.  (2004) Temperature-sensitive control of protein activity by conditionally splicing inteins. Nat Biotechnol 22(7):871-6
Gimble FS, et al.  (2003) Assessing the plasticity of DNA target site recognition of the PI-SceI homing endonuclease using a bacterial two-hybrid selection system. J Mol Biol 334(5):993-1008
Miyake T, et al.  (2003) Involvement of the VDE homing endonuclease and rapamycin in regulation of the Saccharomyces cerevisiae GSH11 gene encoding the high affinity glutathione transporter. J Biol Chem 278(41):39632-6
Nagai Y, et al.  (2003) Karyopherin-mediated nuclear import of the homing endonuclease VMA1-derived endonuclease is required for self-propagation of the coding region. Mol Cell Biol 23(5):1726-36
Mizutani R, et al.  (2002) Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides. J Mol Biol 316(4):919-29
Posey KL and Gimble FS  (2002) Insertion of a reversible redox switch into a rare-cutting DNA endonuclease. Biochemistry 41(7):2184-90
Gimble FS  (2001) Degeneration of a homing endonuclease and its target sequence in a wild yeast strain. Nucleic Acids Res 29(20):4215-23
Christ F, et al.  (2000) A model for the PI-SceIxDNA complex based on multiple base and phosphate backbone-specific photocross-links. J Mol Biol 300(4):867-75
Hu D, et al.  (2000) Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking. J Biol Chem 275(4):2705-12
Poland BW, et al.  (2000) Structural insights into the protein splicing mechanism of PI-SceI. J Biol Chem 275(22):16408-13
Wende W, et al.  (2000) [Analysis of binding and cleavage of DNA by the gene conversion PI-SCEI endonuclease using site-directed mutagenesis] Mol Biol (Mosk) 34(6):1054-64
Hu D, et al.  (1999) Mapping of a DNA binding region of the PI-sceI homing endonuclease by affinity cleavage and alanine-scanning mutagenesis. Biochemistry 38(39):12621-8
Miyamoto S, et al.  (1999) Recognition and cleavage of double-stranded DNA by yeast VMA1-derived endonuclease. Nucleic Acids Symp Ser (42):197-8
Pingoud V, et al.  (1999) Photocross-linking of the homing endonuclease PI-SceI to its recognition sequence. J Biol Chem 274(15):10235-43
Chong S, et al.  (1998) Modulation of protein splicing of the Saccharomyces cerevisiae vacuolar membrane ATPase intein. J Biol Chem 273(17):10567-77
Grindl W, et al.  (1998) The protein splicing domain of the homing endonuclease PI-sceI is responsible for specific DNA binding. Nucleic Acids Res 26(8):1857-62
Nahon E and Raveh D  (1998) Targeting a truncated Ho-endonuclease of yeast to novel DNA sites with foreign zinc fingers. Nucleic Acids Res 26(5):1233-9
Pingoud V, et al.  (1998) Structural and functional analysis of the homing endonuclease PI-sceI by limited proteolytic cleavage and molecular cloning of partial digestion products. Biochemistry 37(22):8233-43
Chong S and Xu MQ  (1997) Protein splicing of the Saccharomyces cerevisiae VMA intein without the endonuclease motifs. J Biol Chem 272(25):15587-90
Kawasaki M, et al.  (1997) Identification of three core regions essential for protein splicing of the yeast Vma1 protozyme. A random mutagenesis study of the entire Vma1-derived endonuclease sequence. J Biol Chem 272(25):15668-74
Kawasaki M, et al.  (1997) Protein splicing in the yeast Vma1 protozyme: evidence for an intramolecular reaction. FEBS Lett 412(3):518-20
Nogami S, et al.  (1997) Probing novel elements for protein splicing in the yeast Vma1 protozyme: a study of replacement mutagenesis and intragenic suppression. Genetics 147(1):73-85
Results: 1 - 30 of 38 records
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