RAP1/YNL216W Literature Guide Help

Other names published for RAP1: GRF1, TBA1, TUF1, YNL216W

RAP1 LITERATURE TOPICS

RAP1 - Regulatory Role (97)

Results: 1 - 30 of 97 records
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ReferenceOther Genes Addressed
Chin SL, et al.  (2012) Dynamics of oscillatory phenotypes in Saccharomyces cerevisiae reveal a network of genome-wide transcriptional oscillators. FEBS J 279(6):1119-30
Geijer C, et al.  (2012) Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. BMC Genomics 13(1):554
Rossouw D, et al.  (2012) Transcriptional regulation and the diversification of metabolism in wine yeast strains. Genetics 190(1):251-61
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Bregman A, et al.  (2011) Promoter elements regulate cytoplasmic mRNA decay. Cell 147(7):1473-83
Carreto L, et al.  (2011) Expression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains. BMC Genomics 12(1):201
Contador CA, et al.  (2011) Identification of transcription factors perturbed by the synthesis of high levels of a foreign protein in yeast saccharomyces cerevisiae. Biotechnol Prog 27(4):925-36
Ganapathi M, et al.  (2011) Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res 39(6):2032-44
Joshi A, et al.  (2011) Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast. Nucleic Acids Res 39(21):9108-17
Knutson BA and Hahn S  (2011) Domains of Tra1 Important for Activator Recruitment and Transcription Coactivator Functions of SAGA and NuA4 Complexes. Mol Cell Biol 31(4):818-831
Shah AN, et al.  (2011) Deletion of a subgroup of ribosome-related genes minimizes hypoxia-induced changes and confers hypoxia tolerance. Physiol Genomics 43(14):855-72
Smith JJ, et al.  (2011) Environment-responsive transcription factors bind subtelomeric elements and regulate gene silencing. Mol Syst Biol 7():455
Venters BJ, et al.  (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92
Zeevi D, et al.  (2011) Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters. Genome Res 21(12):2114-28
Hu J, et al.  (2010) Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast. Comput Biol Chem 34(2):106-14
Lavoie H, et al.  (2010) Evolutionary tinkering with conserved components of a transcriptional regulatory network. PLoS Biol 8(3):e1000329
Ma M and Liu ZL  (2010) Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae. BMC Genomics 11():660
Zeng T and Li J  (2010) Maximization of negative correlations in time-course gene expression data for enhancing understanding of molecular pathways. Nucleic Acids Res 38(1):e1
Chen T and Li F  (2009) Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data. Int J Bioinform Res Appl 5(6):625-46
Hirano Y, et al.  (2009) Rif1 and rif2 inhibit localization of tel1 to DNA ends. Mol Cell 33(3):312-22
Li A and Tuck D  (2009) An effective tri-clustering algorithm combining expression data with gene regulation information. Gene Regul Syst Bio 3:49-64
Muller D and Stelling J  (2009) Precise regulation of gene expression dynamics favors complex promoter architectures. PLoS Comput Biol 5(1):e1000279
Pelechano V, et al.  (2009) Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet 5(8):e1000614
Song M, et al.  (2009) Discrete dynamical system modelling for gene regulatory networks of 5-hydroxymethylfurfural tolerance for ethanologenic yeast. IET Syst Biol 3(3):203
Swamy KB, et al.  (2009) Impact of DNA-binding position variants on yeast gene expression. Nucleic Acids Res 37(21):6991-7001
Xiao Y and Segal MR  (2009) Identification of yeast transcriptional regulation networks using multivariate random forests. PLoS Comput Biol 5(6):e1000414
Ye C, et al.  (2009) Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. PLoS Comput Biol 5(3):e1000311
Ye Y, et al.  (2009) Gaining insight into the response logic of Saccharomyces cerevisiae to heat shock by combining expression profiles with metabolic pathways. Biochem Biophys Res Commun 385(3):357-62
van Werven FJ, et al.  (2009) Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome. Nat Struct Mol Biol 16(10):1043-8
Bendjennat M and Weil PA  (2008) The transcriptional repressor activator protein Rap1p is a direct regulator of TATA-binding protein. J Biol Chem 283(13):8699-710
Results: 1 - 30 of 97 records
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