ABF1/YKL112W Literature Guide Help

Other names published for ABF1: BAF1, OBF1, REB2, SBF1, YKL112W

ABF1 - Regulatory Role (72)

Results: 1 - 30 of 72 records
   1  2  3 
ReferenceOther Genes Addressed
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Eser U, et al.  (2011) Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change. Mol Cell 43(4):515-27
Ganapathi M, et al.  (2011) Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res 39(6):2032-44
Swamy KB, et al.  (2011) Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast. BMC Evol Biol 11(1):150
Hu J, et al.  (2010) Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast. Comput Biol Chem 34(2):106-14
Venkataram S and Fay JC  (2010) Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence? Genome Biol Evol 2():851-8
Chen T and Li F  (2009) Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data. Int J Bioinform Res Appl 5(6):625-46
Li A and Tuck D  (2009) An effective tri-clustering algorithm combining expression data with gene regulation information. Gene Regul Syst Bio 3:49-64
Swamy KB, et al.  (2009) Impact of DNA-binding position variants on yeast gene expression. Nucleic Acids Res 37(21):6991-7001
Woo DK, et al.  (2009) Multiple pathways of mitochondrial-nuclear communication in yeast: Intergenomic signaling involves ABF1 and affects a different set of genes than retrograde regulation. Biochim Biophys Acta 1789(2):135-45
Xiao Y and Segal MR  (2009) Identification of yeast transcriptional regulation networks using multivariate random forests. PLoS Comput Biol 5(6):e1000414
Ye C, et al.  (2009) Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. PLoS Comput Biol 5(3):e1000311
[No authors listed]  (2009) [The influence of mutations at ATG triplets of the open reading frame SUP35 on viability of the yeast Saccharomyces cerevisiae] Genetika 45(2):178-84
Choi JK and Kim YJ  (2008) Epigenetic regulation and the variability of gene expression. Nat Genet 40(2):141-7
Jimenez-Marti E and Del Olmo ML  (2008) Addition of ammonia or amino acids to a nitrogen-depleted medium affects gene expression patterns in yeast cells during alcoholic fermentation. FEMS Yeast Res 8(2):245-56
Kundaje A, et al.  (2008) A predictive model of the oxygen and heme regulatory network in yeast. PLoS Comput Biol 4(11):e1000224
Schlecht U, et al.  (2008) Genome-wide Expression Profiling, In Vivo DNA Binding Analysis, and Probabilistic Motif Prediction Reveal Novel Abf1 Target Genes during Fermentation, Respiration, and Sporulation in Yeast. Mol Biol Cell 19(5):2193-2207
Zhao Y, et al.  (2008) Development of a Novel Oligonucleotide Array-Based Transcription Factor Assay Platform for Genome-Wide Active Transcription Factor Profiling in Saccharomyces cerevisiae. J Proteome Res 7(3):1315-1325
Tevzadze GG, et al.  (2007) Genetic evidence for a SPO1-dependent signaling pathway controlling meiotic progression in yeast. Genetics 175(3):1213-27
Yarragudi A, et al.  (2007) Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae. Nucleic Acids Res 35(1):193-202
Albanese V, et al.  (2006) Systems analyses reveal two chaperone networks with distinct functions in eukaryotic cells. Cell 124(1):75-88
Aranda C, et al.  (2006) Gcn5p contributes to the bidirectional character of the UGA3-GLT1 yeast promoter. Biochem Biophys Res Commun 348(3):989-96
Chua G, et al.  (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
Guo X, et al.  (2006) Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae. Bioinformatics 22(4):392-9
Hart CE, et al.  (2006) Connectivity in the yeast cell cycle transcription network: inferences from neural networks. PLoS Comput Biol 2(12):e169
Ishida C, et al.  (2006) The UGA3-GLT1 intergenic region constitutes a promoter whose bidirectional nature is determined by chromatin organization in Saccharomyces cerevisiae. Mol Microbiol 59(6):1790-806
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Yu H and Gerstein M  (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31
Yu T and Li KC  (2005) Inference of transcriptional regulatory network by two-stage constrained space factor analysis. Bioinformatics 21(21):4033-8
Luscombe NM, et al.  (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431(7006):308-12
Results: 1 - 30 of 72 records
   1  2  3