| Kumbhar NM, et al. (2012) Structural significance of hypermodified nucleic acid base hydroxywybutine (OHyW) which occur at 37th position in the anticodon loop of yeast tRNA(Phe). J Mol Graph Model 38():174-85
|
|
| Seetin MG and Mathews DH (2011) Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints.LID - 10.1002/jcc.21806 [doi] J Comput Chem ()
|
|
| Rambo RP and Tainer JA (2010) Improving small-angle X-ray scattering data for structural analyses of the RNA world. RNA 16(3):638-46
|
|
| Kauffmann AD, et al. (2009) Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides. Nucleic Acids Res 37(18):e121
|
|
| Frazer-Abel AA and Hagerman PJ (2008) Core flexibility of a truncated metazoan mitochondrial tRNA. Nucleic Acids Res 36(17):5472-81
|
|
| Jenek M and Kierzek E (2008) Isoenergetic microarray mapping - the advantages of this method in studying the structure of Saccharomyces cerevisiae tRNAPhe. Nucleic Acids Symp Ser (Oxf) (52):219-20
|
|
| Meskauskas A and Dinman JD (2008) Ribosomal protein L3 functions as a 'rocker switch' to aid in coordinating of large subunit-associated functions in eukaryotes and Archaea. Nucleic Acids Res 36(19):6175-86
|
|
| Oliva R, et al. (2006) Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions. Nucleic Acids Res 34(3):865-79
|
|
| Brauns EB and Dyer RB (2005) Time-resolved infrared spectroscopy of RNA folding. Biophys J 89(5):3523-30
|
|
| Giel-Pietraszuk M and Barciszewski J (2005) A nature of conformational changes of yeast tRNA(Phe) High hydrostatic pressure effects. Int J Biol Macromol 37(3):109-14
|
|
| Lee JC, et al. (2003) The lonepair triloop: a new motif in RNA structure. J Mol Biol 325(1):65-83
|
|
| Stuart JW, et al. (2003) Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe). J Mol Biol 334(5):901-18
|
|
| Misra VK and Draper DE (2002) The linkage between magnesium binding and RNA folding. J Mol Biol 317(4):507-21
|
|
| Nobles KN, et al. (2002) Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding. Nucleic Acids Res 30(21):4751-60
|
|
| Serebrov V, et al. (2001) Mg2+-induced tRNA folding. Biochemistry 40(22):6688-98
|
|
| Shelton VM, et al. (2001) Altering the intermediate in the equilibrium folding of unmodified yeast tRNAPhe with monovalent and divalent cations. Biochemistry 40(12):3629-38
|
|
| Fang X, et al. (2000) Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering. Biochemistry 39(36):11107-13
|
|
| Jovine L, et al. (2000) The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals. J Mol Biol 301(2):401-14
|
|
| Misra VK and Draper DE (2000) Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model. J Mol Biol 299(3):813-25
|
|
| Shi H and Moore PB (2000) The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited. RNA 6(8):1091-105
|
|
| Wittberger D, et al. (2000) Evaluation of uranyl photocleavage as a probe to monitor ion binding and flexibility in RNAs. J Mol Biol 300(2):339-52
|
|
| Ashraf SS, et al. (1999) Single atom modification (O-->S) of tRNA confers ribosome binding. RNA 5(2):188-94
|
|
| Auffinger P and Westhof E (1999) Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes. J Mol Biol 292(3):467-83
|
|
| Carmona P, et al. (1999) Conformational structure and binding mode of glyceraldehyde-3-phosphate dehydrogenase to tRNA studied by Raman and CD spectroscopy. Biochim Biophys Acta 1432(2):222-33
|
|
| Koshlap KM, et al. (1999) A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain. Biochemistry 38(27):8647-56
|
|
| Scarabino D, et al. (1999) tRNA prefers to kiss. EMBO J 18(16):4571-8
|
|
| Shelton VM, et al. (1999) Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding. Biochemistry 38(51):16831-9
|
|
| Friederich MW, et al. (1998) Global flexibility of tertiary structure in RNA: yeast tRNAPhe as a model system. Proc Natl Acad Sci U S A 95(7):3572-7
|
|
| Frugier M, et al. (1998) Sequences outside recognition sets are not neutral for tRNA aminoacylation. Evidence for nonpermissive combinations of nucleotides in the acceptor stem of yeast tRNAPhe. J Biol Chem 273(19):11605-10
|
|
| Maglott EJ and Glick GD (1998) Probing structural elements in RNA using engineered disulfide cross-links. Nucleic Acids Res 26(5):1301-8
|
|
