UBI4/YLL039C Literature Guide Help

Other names published for UBI4: SCD2, UB14, ubiquitin, YLL039C

UBI4 - Protein/Nucleic Acid Structure (26)

ReferenceOther Genes Addressed
Sohn CH, et al.  (2012) Designer reagents for mass spectrometry-based proteomics: clickable cross-linkers for elucidation of protein structures and interactions. Anal Chem 84(6):2662-9
Kanamori E, et al.  (2011) Structure determination of a protein assembly by amino acid selective cross-saturation. Proteins 79(1):179-90
Mishra P, et al.  (2011) Q2N and S65D substitutions of ubiquitin unravel functional significance of the invariant residues Gln2 and Ser65. Cell Biochem Biophys 61(3):619-28
Hagai T and Levy Y  (2010) Ubiquitin not only serves as a tag but also assists degradation by inducing protein unfolding. Proc Natl Acad Sci U S A 107(5):2001-6
Pastushok L, et al.  (2010) Constitutive fusion of ubiquitin to PCNA provides DNA damage tolerance independent of translesion polymerase activities. Nucleic Acids Res 38(15):5047-58
Sgourakis NG, et al.  (2010) Conformational Dynamics and Structural Plasticity Play Critical Roles in the Ubiquitin Recognition of a UIM Domain. J Mol Biol 396(4):1128-1144
Moriya J, et al.  (2009) An NMR method for the determination of protein binding interfaces using TEMPOL-induced chemical shift perturbations. Biochim Biophys Acta 1790(10):1368-76
Zhang D, et al.  (2009) Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor. Mol Cell 36(6):1018-33
Haririnia A, et al.  (2008) Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins. J Mol Biol 375(4):979-96
Rea AM, et al.  (2008) Aromatic Residues Engineered into the beta-Turn Nucleation Site of Ubiquitin Lead to a Complex Folding Landscape, Non-Native Side-Chain Interactions, and Kinetic Traps (dagger). Biochemistry 47(48):12910-22
He Y, et al.  (2007) Structural Basis for Ubiquitin Recognition by SH3 Domains. J Mol Biol 373(1):190-6
Stamenova SD, et al.  (2007) Ubiquitin binds to and regulates a subset of SH3 domains. Mol Cell 25(2):273-84
Swanson KA, et al.  (2006) Structural Basis for Monoubiquitin Recognition by the Ede1 UBA Domain. J Mol Biol 358(3):713-24
Merkley N, et al.  (2005) Ubiquitin manipulation by an E2 conjugating enzyme using a novel covalent intermediate. J Biol Chem 280(36):31732-8
Ohno A, et al.  (2005) Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition. Structure 13(4):521-32
Crespo MD, et al.  (2004) Context-dependent effects of proline residues on the stability and folding pathway of ubiquitin. Eur J Biochem 271(22):4474-84
Varadan R, et al.  (2004) Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling. J Biol Chem 279(8):7055-63
Platt GW, et al.  (2003) Stability and folding kinetics of a ubiquitin mutant with a strong propensity for nonnative beta-hairpin conformation in the unfolded state. Biochemistry 42(46):13762-71
Ermolenko DN, et al.  (2002) Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices. J Mol Biol 322(1):123-35
Sloper-Mould KE, et al.  (2001) Distinct functional surface regions on ubiquitin. J Biol Chem 276(32):30483-9
Hamilton KS, et al.  (2000) Identification of the ubiquitin interfacial residues in a ubiquitin-E2 covalent complex. J Biomol NMR 18(4):319-27
Shih SC, et al.  (2000) Monoubiquitin carries a novel internalization signal that is appended to activated receptors. EMBO J 19(2):187-98
Rajesh S, et al.  (1999) Ubiquitin binding interface mapping on yeast ubiquitin hydrolase by NMR chemical shift perturbation. Biochemistry 38(29):9242-53
Sakamoto T, et al.  (1999) An NMR analysis of ubiquitin recognition by yeast ubiquitin hydrolase: evidence for novel substrate recognition by a cysteine protease. Biochemistry 38(36):11634-42
Vijay-Kumar S, et al.  (1987) Comparison of the three-dimensional structures of human, yeast, and oat ubiquitin. J Biol Chem 262(13):6396-9
Wilkinson KD, et al.  (1986) Structure and activities of a variant ubiquitin sequence from bakers' yeast. Biochemistry 25(18):4999-5004