RPN4/YDL020C Literature Guide Help

Other names published for RPN4: SON1, UFD5, YDL020C

RPN4 - Protein-Nucleic Acid Interactions (16)

ReferenceOther Genes Addressed
Erb I and van Nimwegen E  (2011) Transcription factor binding site positioning in yeast: proximal promoter motifs characterize tata-less promoters. PLoS One 6(9):e24279
Spasskaia DC, et al.  (2011) [Escherichia coli Dam methylase as a molecular tool for mapping binding sites of the yeast transcription factor Rpn4]. Mol Biol (Mosk) 45(4):642-51
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Fordyce PM, et al.  (2010) De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol 28(9):970-5
Ju D, et al.  (2010) Inhibition of proteasomal degradation of rpn4 impairs nonhomologous end-joining repair of DNA double-strand breaks. PLoS One 5(4):e9877
Morris RT, et al.  (2010) Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae. Bioinformatics 26(2):168-74
Badis G, et al.  (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32(6):878-87
Dmitry KS, et al.  (2008) Mapping of yeast Rpn4p transactivation domains. FEBS Lett 582(23-24):3459-64
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Workman CT, et al.  (2006) A systems approach to mapping DNA damage response pathways. Science 312(5776):1054-9
Lee D, et al.  (2005) The proteasome regulatory particle alters the SAGA coactivator to enhance its interactions with transcriptional activators. Cell 123(3):423-36
Gasch AP, et al.  (2004) Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol 2(12):e398
Mukherjee S, et al.  (2004) Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays. Nat Genet 36(12):1331-9
Owsianik G, et al.  (2002) Control of 26S proteasome expression by transcription factors regulating multidrug resistance in Saccharomyces cerevisiae. Mol Microbiol 43(5):1295-308
Kapranov AB, et al.  (2001) [Isolation and identification of PACE-binding protein rpn4--a new transcription activator, participating in regulation of 26S proteosome and other genes] Mol Biol (Mosk) 35(3):420-31
Mannhaupt G, et al.  (1999) Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast. FEBS Lett 450(1-2):27-34