RAP1/YNL216W Literature Guide Help

Other names published for RAP1: GRF1, TBA1, TUF1, YNL216W

RAP1 LITERATURE TOPICS

RAP1 - Protein-Nucleic Acid Interactions (128)

Results: 1 - 30 of 128 records
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ReferenceOther Genes Addressed
Gossett AJ and Lieb JD  (2012) In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae. PLoS Genet 8(6):e1002771
Lickwar CR, et al.  (2012) Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function. Nature 484(7393):251-5
Matot B, et al.  (2012) The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA. Nucleic Acids Res 40(7):3197-207
Pfeiffer V and Lingner J  (2012) TERRA Promotes Telomere Shortening through Exonuclease 1-Mediated Resection of Chromosome Ends. PLoS Genet 8(6):e1002747
Poschke H, et al.  (2012) Rif2 Promotes a Telomere Fold-Back Structure through Rpd3L Recruitment in Budding Yeast. PLoS Genet 8(9):e1002960
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Yarrington RM, et al.  (2012) Novel transcript truncating function of Rap1p revealed by synthetic codon-optimized Ty1 retrotransposon. Genetics 190(2):523-35
Zhang X, et al.  (2012) Functions of Protosilencers in the Formation and Maintenance of Heterochromatin in Saccharomyces cerevisiae. PLoS One 7(5):e37092
Bregman A, et al.  (2011) Promoter elements regulate cytoplasmic mRNA decay. Cell 147(7):1473-83
Gustafsson C, et al.  (2011) Rap1 binds single-stranded DNA at telomeric double- and single-stranded junctions and competes with Cdc13 protein. J Biol Chem 286(52):45174-85
Henikoff JG, et al.  (2011) Epigenome characterization at single base-pair resolution. Proc Natl Acad Sci U S A 108(45):18318-23
Knutson BA and Hahn S  (2011) Domains of Tra1 Important for Activator Recruitment and Transcription Coactivator Functions of SAGA and NuA4 Complexes. Mol Cell Biol 31(4):818-831
Kubota T, et al.  (2011) Quantitative proteomic analysis of chromatin reveals that Ctf18 acts in the DNA replication checkpoint. Mol Cell Proteomics 10(7):M110.005561
Pan J, et al.  (2011) A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation. Cell 144(5):719-31
Rhee HS and Pugh BF  (2011) Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell 147(6):1408-19
Zhou BO, et al.  (2011) Histone H4 Lysine 12 Acetylation Regulates Telomeric Heterochromatin Plasticity in Saccharomyces cerevisiae. PLoS Genet 7(1):e1001272
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Chen X, et al.  (2010) A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data. Bioinformatics 26(12):i334-42
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Lavoie H, et al.  (2010) Evolutionary tinkering with conserved components of a transcriptional regulatory network. PLoS Biol 8(3):e1000329
Lu J and Liu Y  (2010) Deletion of Ogg1 DNA glycosylase results in telomere base damage and length alteration in yeast. EMBO J 29(2):398-409
McGee JS, et al.  (2010) Reduced Rif2 and lack of Mec1 target short telomeres for elongation rather than double-strand break repair. Nat Struct Mol Biol 17(12):1438-45
Morris RT, et al.  (2010) Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae. Bioinformatics 26(2):168-74
Papai G, et al.  (2010) TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation. Nature 465(7300):956-60
Therizols P, et al.  (2010) Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres. Proc Natl Acad Sci U S A 107(5):2025-30
Williams TL, et al.  (2010) Characterization of the Yeast Telomere Nucleoprotein Core: Rap1 BINDS INDEPENDENTLY TO EACH RECOGNITION SITE. J Biol Chem 285(46):35814-24
Zill OA, et al.  (2010) Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly. PLoS Biol 8(11):e1000550
Ahn SH, et al.  (2009) Ctk1 promotes dissociation of basal transcription factors from elongating RNA polymerase II. EMBO J 28(3):205-12
Halperin Y, et al.  (2009) Allegro: analyzing expression and sequence in concert to discover regulatory programs. Nucleic Acids Res 37(5):1566-79
Hesselberth JR, et al.  (2009) Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6(4):283-9
Results: 1 - 30 of 128 records
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