PHO4/YFR034C Literature Guide Help

Other names published for PHO4: phoD, YFR034C

PHO4 - Protein-Nucleic Acid Interactions (41)

Results: 1 - 30 of 41 records
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ReferenceOther Genes Addressed
He Y, et al.  (2012) Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins. Mol Microbiol 83(2):395-407
Kerwin CL and Wykoff DD  (2012) De novo generation of a phosphate starvation-regulated promoter in Candida glabrata. FEMS Yeast Res 12(8):980-9
Raveh-Sadka T, et al.  (2012) Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast.LID - 10.1038/ng.2305 [doi] Nat Genet ()
Mao C, et al.  (2011) Occlusion of regulatory sequences by promoter nucleosomes in vivo. PLoS One 6(3):e17521
Pan J, et al.  (2011) A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation. Cell 144(5):719-31
Tsankov A, et al.  (2011) Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Res 21(11):1851-62
Zhou X and O'Shea EK  (2011) Integrated Approaches Reveal Determinants of Genome-wide Binding and Function of the Transcription Factor Pho4. Mol Cell 42(6):826-36
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Fordyce PM, et al.  (2010) De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol 28(9):970-5
Morris RT, et al.  (2010) Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae. Bioinformatics 26(2):168-74
Ransom M, et al.  (2009) FACT and the Proteasome Promote Promoter Chromatin Disassembly and Transcriptional Initiation. J Biol Chem 284(35):23461-71
Lam FH, et al.  (2008) Chromatin decouples promoter threshold from dynamic range. Nature 453(7192):246-250
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Nishizawa M, et al.  (2008) Nutrient-Regulated Antisense and Intragenic RNAs Modulate a Signal Transduction Pathway in Yeast. PLoS Biol 6(12):e326
Nishizawa M, et al.  (2008) Transcriptional repression by the Pho4 transcription factor controls the timing of SNZ1 expression. Eukaryot Cell 7(6):949-57
Adkins MW, et al.  (2007) Chromatin disassembly from the PHO5 promoter is essential for the recruitment of the general transcription machinery and coactivators. Mol Cell Biol 27(18):6372-82
Maerkl SJ and Quake SR  (2007) A systems approach to measuring the binding energy landscapes of transcription factors. Science 315(5809):233-7
Adkins MW and Tyler JK  (2006) Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Mol Cell 21(3):405-16
Chua G, et al.  (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
McDonald RJ, et al.  (2006) DNA bending by bHLH charge variants. Nucleic Acids Res 34(17):4846-56
Adkins MW, et al.  (2004) Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes. Mol Cell 14(5):657-66
Nourani A, et al.  (2004) Recruitment of the NuA4 complex poises the PHO5 promoter for chromatin remodeling and activation. EMBO J 23(13):2597-607
Griesenbeck J, et al.  (2003) Affinity purification of specific chromatin segments from chromosomal loci in yeast. Mol Cell Biol 23(24):9275-82
Springer M, et al.  (2003) Partially phosphorylated Pho4 activates transcription of a subset of phosphate-responsive genes. PLoS Biol 1(2):E28
Terrell AR, et al.  (2002) Reconstitution of nucleosome positioning, remodeling, histone acetylation, and transcriptional activation on the PHO5 promoter. J Biol Chem 277(34):31038-47
Cave JW, et al.  (2000) Backbone dynamics of sequence specific recognition and binding by the yeast Pho4 bHLH domain probed by NMR. Protein Sci 9(12):2354-65
Gregory PD, et al.  (1999) Chromatin remodelling at the PHO8 promoter requires SWI-SNF and SAGA at a step subsequent to activator binding. EMBO J 18(22):6407-14
Xia ZX and Ao SZ  (1999) Functional Analysis of the Upstream Sequence of PHO81 Gene of Saccharomyces cerevisiae. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai) 31(1):83-89
Xia ZX and Ao SZ  (1999) PHO4 and PHO2 Protein Interact with Upstream Sequence of PHO81 Gene. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai) 31(2):191-196
Barbaric S, et al.  (1998) Cooperative Pho2-Pho4 interactions at the PHO5 promoter are critical for binding of Pho4 to UASp1 and for efficient transactivation by Pho4 at UASp2. Mol Cell Biol 18(5):2629-39
Results: 1 - 30 of 41 records
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