GCN4/YEL009C Literature Guide Help

Other names published for GCN4: AAS3, ARG9, AAS101, YEL009C

GCN4 - Protein-Nucleic Acid Interactions (166)

Results: 1 - 30 of 166 records
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ReferenceOther Genes Addressed
Crisucci EM and Arndt KM  (2012) Paf1 restricts Gcn4 occupancy and antisense transcription at the ARG1 promoter. Mol Cell Biol 32(6):1150-63
Hansen L, et al.  (2012) Differences in local genomic context of bound and unbound motifs. Gene 506(1):125-34
Mousley CJ, et al.  (2012) A sterol-binding protein integrates endosomal lipid metabolism with TOR signaling and nitrogen sensing. Cell 148(4):702-15
Nikolaev Y and Pervushin K  (2012) Structural basis of RNA binding by leucine zipper GCN4. Protein Sci 21(5):667-76
Raveh-Sadka T, et al.  (2012) Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast.LID - 10.1038/ng.2305 [doi] Nat Genet ()
Rosonina E, et al.  (2012) Sumoylation of transcription factor Gcn4 facilitates its Srb10-mediated clearance from promoters in yeast. Genes Dev 26(4):350-5
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Erb I and van Nimwegen E  (2011) Transcription factor binding site positioning in yeast: proximal promoter motifs characterize tata-less promoters. PLoS One 6(9):e24279
Ghosh S and Pugh BF  (2011) Sequential recruitment of SAGA and TFIID in a genomic response to DNA damage in Saccharomyces cerevisiae. Mol Cell Biol 31(1):190-202
Joo YJ, et al.  (2011) Gcn4p-mediated transcriptional repression of ribosomal protein genes under amino-acid starvation. EMBO J 30(5):859-72
Knutson BA and Hahn S  (2011) Domains of Tra1 Important for Activator Recruitment and Transcription Coactivator Functions of SAGA and NuA4 Complexes. Mol Cell Biol 31(4):818-831
Nutiu R, et al.  (2011) Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument.LID - 10.1038/nbt.1882 [doi] Nat Biotechnol ()
Wong KH and Struhl K  (2011) The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein. Genes Dev 25(23):2525-39
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Fordyce PM, et al.  (2010) De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol 28(9):970-5
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Jedidi I, et al.  (2010) Activator Gcn4 employs multiple segments of Med15/Gal11, including the KIX domain, to recruit mediator to target genes in vivo. J Biol Chem 285(4):2438-55
Azuma Y, et al.  (2009) Cobalt(II)-responsive DNA binding of a GCN4-bZIP protein containing cysteine residues functionalized with iminodiacetic acid. Angew Chem Int Ed Engl 48(37):6853-6
Gordan R, et al.  (2009) Distinguishing direct versus indirect transcription factor-DNA interactions. Genome Res 19(11):2090-100
Joo YJ, et al.  (2009) Cooperative regulation of ADE3 transcription by Gcn4p and Bas1p in Saccharomyces cerevisiae. Eukaryot Cell 8(8):1268-77
Moxley JF, et al.  (2009) Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p. Proc Natl Acad Sci U S A 106(16):6477-82
Ye C, et al.  (2009) Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. PLoS Comput Biol 5(3):e1000311
Yoon S and Hinnebusch AG  (2009) Mcm1p binding sites in ARG1 positively regulate Gcn4p binding and SWI/SNF recruitment. Biochem Biophys Res Commun 381(1):123-8
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Chan IS, et al.  (2007) The GCN4 bZIP targets noncognate gene regulatory sequences: quantitative investigation of binding at full and half sites. Biochemistry 46(6):1663-71
McDonald RJ, et al.  (2007) DNA bending by charged peptides: electrophoretic and spectroscopic analyses. Biochemistry 46(9):2306-16
Seong KM, et al.  (2007) A new method for the construction of a mutant library with a predictable occurrence rate using Poisson distribution. J Microbiol Methods 69(3):442-50
Chua G, et al.  (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
Fedorova AV, et al.  (2006) The GCN4 bZIP can bind to noncognate gene regulatory sequences. Biochim Biophys Acta 1764(7):1252-9
Ishida C, et al.  (2006) The UGA3-GLT1 intergenic region constitutes a promoter whose bidirectional nature is determined by chromatin organization in Saccharomyces cerevisiae. Mol Microbiol 59(6):1790-806
Results: 1 - 30 of 166 records
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