REB1/YBR049C Literature Guide Help

Other names published for REB1: GRF2, YBR049C

REB1 - Protein-Nucleic Acid Interactions (76)

Results: 1 - 30 of 76 records
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ReferenceOther Genes Addressed
Gossett AJ and Lieb JD  (2012) In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae. PLoS Genet 8(6):e1002771
Hansen L, et al.  (2012) Differences in local genomic context of bound and unbound motifs. Gene 506(1):125-34
Ribaud V, et al.  (2012) DNA-end capping by the budding yeast transcription factor and subtelomeric binding protein Tbf1. EMBO J 31(1):138-49
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Bai L, et al.  (2011) Multiple Sequence-Specific Factors Generate the Nucleosome-Depleted Region on CLN2 Promoter. Mol Cell 42(4):465-76
Henikoff JG, et al.  (2011) Epigenome characterization at single base-pair resolution. Proc Natl Acad Sci U S A 108(45):18318-23
Pan J, et al.  (2011) A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation. Cell 144(5):719-31
Rhee HS and Pugh BF  (2011) Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell 147(6):1408-19
Zhang Z, et al.  (2011) A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 332(6032):977-80
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Fordyce PM, et al.  (2010) De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol 28(9):970-5
Goetze H, et al.  (2010) Alternative Chromatin Structures of the 35S rRNA Genes in Saccharomyces cerevisiae Provide a Molecular Basis for the Selective Recruitment of RNA Polymerases I and II. Mol Cell Biol 30(8):2028-45
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Mayan M and Aragon L  (2010) Cis-interactions between non-coding ribosomal spacers dependent on RNAP-II separate RNAP-I and RNAP-III transcription domains. Cell Cycle 9(21):4328-37
Hartley PD and Madhani HD  (2009) Mechanisms that specify promoter nucleosome location and identity. Cell 137(3):445-58
Hesselberth JR, et al.  (2009) Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6(4):283-9
Swamy KB, et al.  (2009) Impact of DNA-binding position variants on yeast gene expression. Nucleic Acids Res 37(21):6991-7001
Venters BJ and Pugh BF  (2009) A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Res 19(3):360-71
Badis G, et al.  (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32(6):878-87
Houseley J, et al.  (2008) A ncRNA Modulates Histone Modification and mRNA Induction in the Yeast GAL Gene Cluster. Mol Cell 32(5):685-95
Kawauchi J, et al.  (2008) Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination. Genes Dev 22(8):1082-92
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Berthiau AS, et al.  (2006) Subtelomeric proteins negatively regulate telomere elongation in budding yeast. EMBO J 25(4):846-56
Hediger F, et al.  (2006) Subtelomeric factors antagonize telomere anchoring and Tel1-independent telomere length regulation. EMBO J 25(4):857-67
Bilu Y and Barkai N  (2005) The design of transcription-factor binding sites is affected by combinatorial regulation. Genome Biol 6(12):R103
Raisner RM, et al.  (2005) Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell 123(2):233-48
Angermayr M and Bandlow W  (2003) Permanent nucleosome exclusion from the Gal4p-inducible yeast GCY1 promoter. J Biol Chem 278(13):11026-31
Angermayr M, et al.  (2003) Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter. J Biol Chem 278(20):17918-26
Van Slyke C and Grayhack EJ  (2003) The essential transcription factor Reb1p interacts with the CLB2 UAS outside of the G2/M control region. Nucleic Acids Res 31(15):4597-607
Fourel G, et al.  (2002) General regulatory factors (GRFs) as genome partitioners. J Biol Chem 277(44):41736-43
Results: 1 - 30 of 76 records
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