tF(GAA)D Literature Guide Help

tF(GAA)D - Primary Literature (43)

ReferenceOther Genes Addressed
Guy MP, et al.  (2012) Yeast Trm7 interacts with distinct proteins for critical modifications of the tRNAPhe anticodon loop. RNA 18(10):1921-33
Jamonnak N, et al.  (2011) Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing. RNA 17(11):2011-25
Rambo RP and Tainer JA  (2010) Improving small-angle X-ray scattering data for structural analyses of the RNA world. RNA 16(3):638-46
Chan PP and Lowe TM  (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-7
Nakayama H, et al.  (2009) Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data. Nucleic Acids Res 37(6):e47
Jenek M and Kierzek E  (2008) Isoenergetic microarray mapping - the advantages of this method in studying the structure of Saccharomyces cerevisiae tRNAPhe. Nucleic Acids Symp Ser (Oxf) (52):219-20
Meskauskas A and Dinman JD  (2008) Ribosomal protein L3 functions as a 'rocker switch' to aid in coordinating of large subunit-associated functions in eukaryotes and Archaea. Nucleic Acids Res 36(19):6175-86
Waas WF, et al.  (2007) Role of a tRNA base modification and its precursors in frameshifting in eukaryotes. J Biol Chem 282(36):26026-34
Stuart JW, et al.  (2003) Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe). J Mol Biol 334(5):901-18
Nobles KN, et al.  (2002) Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding. Nucleic Acids Res 30(21):4751-60
Serebrov V, et al.  (2001) Mg2+-induced tRNA folding. Biochemistry 40(22):6688-98
Yu Q and Morrow CD  (2001) Identification of critical elements in the tRNA acceptor stem and T(Psi)C loop necessary for human immunodeficiency virus type 1 infectivity. J Virol 75(10):4902-6
Fang X, et al.  (2000) Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering. Biochemistry 39(36):11107-13
Jovine L, et al.  (2000) The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals. J Mol Biol 301(2):401-14
Ashraf SS, et al.  (1999) Single atom modification (O-->S) of tRNA confers ribosome binding. RNA 5(2):188-94
Yarian CS, et al.  (1999) Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39. Nucleic Acids Res 27(17):3543-9
Fabbri S, et al.  (1998) Conservation of substrate recognition mechanisms by tRNA splicing endonucleases. Science 280(5361):284-6
Friederich MW, et al.  (1998) Global flexibility of tertiary structure in RNA: yeast tRNAPhe as a model system. Proc Natl Acad Sci U S A 95(7):3572-7
Frugier M, et al.  (1998) Sequences outside recognition sets are not neutral for tRNA aminoacylation. Evidence for nonpermissive combinations of nucleotides in the acceptor stem of yeast tRNAPhe. J Biol Chem 273(19):11605-10
Hani J and Feldmann H  (1998) tRNA genes and retroelements in the yeast genome. Nucleic Acids Res 26(3):689-96
Maglott EJ and Glick GD  (1998) Probing structural elements in RNA using engineered disulfide cross-links. Nucleic Acids Res 26(5):1301-8
Percudani R, et al.  (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30
Dix DB, et al.  (1986) Effect of replacing uridine 33 in yeast tRNAPhe on the reaction with ribosomes. J Biol Chem 261(22):10112-8
Heerschap A, et al.  (1983) Nuclear magnetic resonance studies on yeast tRNAPhe. II. Assignment of the iminoproton resonances of the anticodon and T stem by means of nuclear Overhauser effect experiments at 500 MHz. Nucleic Acids Res 11(13):4483-99
Heerschap A, et al.  (1983) Nuclear magnetic resonance studies on yeast tRNAPhe. III. Assignments of the iminoproton resonances of the tertiary structure by means of nuclear Overhauser effect experiments at 500 MHz. Nucleic Acids Res 11(13):4501-20
Krzyzosiak WJ and Ciesiolka J  (1983) Long-range conformational transition in yeast tRNAPhe, induced by the Y-base removal and detected by chloroacetaldehyde modification. Nucleic Acids Res 11(19):6913-21
Roy S and Redfield AG  (1983) Assignment of imino proton spectra of yeast phenylalanine transfer ribonucleic acid. Biochemistry 22(6):1386-90
Tropp JS and Redfield AG  (1983) Proton exchange rates in transfer RNA as a function of spermidine and magnesium. Nucleic Acids Res 11(7):2121-34
Bruce AG and Uhlenbeck OC  (1982) Specific interaction of anticodon loop residues with yeast phenylalanyl-tRNA synthetase. Biochemistry 21(17):3921-6
Fritzinger DC and Fournier MJ  (1982) Carbodiimide modification analysis of aminoacylated yeast phenylalanine tRNA: evidence for change in the apex region. Nucleic Acids Res 10(7):2419-37