ABF1/YKL112W Literature Guide Help

Other names published for ABF1: BAF1, OBF1, REB2, SBF1, YKL112W

ABF1 - Primary Literature (63)

Results: 1 - 30 of 63 records
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ReferenceOther Genes Addressed
van Bakel H, et al.  (2013) A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription. PLoS Genet 9(5):e1003479
Hansen L, et al.  (2012) Differences in local genomic context of bound and unbound motifs. Gene 506(1):125-34
Ganapathi M, et al.  (2011) Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res 39(6):2032-44
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Venkataram S and Fay JC  (2010) Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence? Genome Biol Evol 2():851-8
Zill OA, et al.  (2010) Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly. PLoS Biol 8(11):e1000550
Hartley PD and Madhani HD  (2009) Mechanisms that specify promoter nucleosome location and identity. Cell 137(3):445-58
Yu S, et al.  (2009) ABF1-binding Sites Promote Efficient Global Genome Nucleotide Excision Repair. J Biol Chem 284(2):966-73
Niu W, et al.  (2008) Mechanisms of Cell Cycle Control Revealed by a Systematic and Quantitative Overexpression Screen in S. cerevisiae. PLoS Genet 4(7):e1000120
Schlecht U, et al.  (2008) Genome-wide Expression Profiling, In Vivo DNA Binding Analysis, and Probabilistic Motif Prediction Reveal Novel Abf1 Target Genes during Fermentation, Respiration, and Sporulation in Yeast. Mol Biol Cell 19(5):2193-2207
Yang Q, et al.  (2008) Rapid chip-based capillary electrophoretic mobility shift assay with negative pressure injection for the binding study of transcription factor Abf1 in Saccharomyces cerevisiae. Electrophoresis 29(24):5003-9
Yarragudi A, et al.  (2007) Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae. Nucleic Acids Res 35(1):193-202
Kawasaki Y, et al.  (2006) Reconstitution of Saccharomyces cerevisiae prereplicative complex assembly in vitro. Genes Cells 11(7):745-56
Zou Y, et al.  (2006) Asymmetric positioning of nucleosomes and directional establishment of transcriptionally silent chromatin by Saccharomyces cerevisiae silencers. Mol Cell Biol 26(20):7806-19
Loch CM, et al.  (2004) Functional and physical interactions between autonomously replicating sequence-binding factor 1 and the nuclear transport machinery. Traffic 5(12):925-35
Miyake T, et al.  (2004) Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae. J Biol Chem 279(33):34865-72
Yarragudi A, et al.  (2004) Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae. Mol Cell Biol 24(20):9152-64
Yu S, et al.  (2004) The yeast Rad7/Rad16/Abf1 complex generates superhelical torsion in DNA that is required for nucleotide excision repair. DNA Repair (Amst) 3(3):277-87
Shimizu M, et al.  (2003) Yeast Ume6p repressor permits activator binding but restricts TBP binding at the HOP1 promoter. Nucleic Acids Res 31(12):3033-7
Fourel G, et al.  (2002) General regulatory factors (GRFs) as genome partitioners. J Biol Chem 277(44):41736-43
Miyake T, et al.  (2002) Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing. Mol Cell Biol 22(2):505-16
Valerius O, et al.  (2002) Multiple factors prevent transcriptional interference at the yeast ARO4-HIS7 locus. J Biol Chem 277(24):21440-5
Bodmer-Glavas M, et al.  (2001) RNA polymerase II and III transcription factors can stimulate DNA replication by modifying origin chromatin structures. Nucleic Acids Res 29(22):4570-80
Lascaris RF, et al.  (2000) Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene. Nucleic Acids Res 28(6):1390-6
Muller M, et al.  (2000) Replication of yeast rDNA initiates downstream of transcriptionally active genes. Mol Cell 5(5):767-77
de Boer M, et al.  (2000) Stp1p, Stp2p and Abf1p are involved in regulation of expression of the amino acid transporter gene BAP3 of Saccharomyces cerevisiae. Nucleic Acids Res 28(4):974-81
Lascaris RF, et al.  (1999) DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences. Bioinformatics 15(4):267-77
Park HD, et al.  (1999) Synergistic operation of the CAR2 (Ornithine transaminase) promoter elements in Saccharomyces cerevisiae. J Bacteriol 181(22):7052-64
Reed SH, et al.  (1999) Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair. Genes Dev 13(23):3052-8
Feng L, et al.  (1998) Saccharomyces cerevisiae Cdc6 stimulates Abf1 DNA binding activity. J Biol Chem 273(3):1298-302
Results: 1 - 30 of 63 records
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