GCN4/YEL009C Literature Guide Help

Other names published for GCN4: AAS3, ARG9, AAS101, YEL009C

GCN4 - Other Features (30)

ReferenceOther Genes Addressed
Selpi S, et al.  (2009) Predicting functional upstream open reading frames in Saccharomyces cerevisiae. BMC Bioinformatics 10():451
Ernst J, et al.  (2007) Reconstructing dynamic regulatory maps. Mol Syst Biol 3():74
Pandey G, et al.  (2007) Extracting the hidden features in saline osmotic tolerance in Saccharomyces cerevisiae from DNA microarray data using the self-organizing map: biosynthesis of amino acids. Appl Microbiol Biotechnol 75(2):415-26
Portwich M, et al.  (2007) A network of coiled-coil associations derived from synthetic GCN4 leucine-zipper arrays. Angew Chem Int Ed Engl 46(10):1654-7
Roider HG, et al.  (2007) Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics 23(2):134-41
Yang HT, et al.  (2007) An analytical rate expression for the kinetics of gene transcription mediated by dimeric transcription factors. J Biochem (Tokyo) 142(2):135-44
Chua G, et al.  (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
Kresnowati MT, et al.  (2006) When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation. Mol Syst Biol 2():49
Workman CT, et al.  (2006) A systems approach to mapping DNA damage response pathways. Science 312(5776):1054-9
Cranz S, et al.  (2004) Monomeric and dimeric bZIP transcription factor GCN4 bind at the same rate to their target DNA site. Biochemistry 43(3):718-27
Yu Q, et al.  (2003) Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression. Nucleic Acids Res 31(4):1224-33
Abdullah MF and Borts RH  (2001) Meiotic recombination frequencies are affected by nutritional states in Saccharomycescerevisiae. Proc Natl Acad Sci U S A 98(25):14524-9
Hughes JD, et al.  (2000) Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J Mol Biol 296(5):1205-14
Bhattacharyya RP and Sosnick TR  (1999) Viscosity dependence of the folding kinetics of a dimeric and monomeric coiled coil. Biochemistry 38(8):2601-9
Mohanty D, et al.  (1999) Correlation between knowledge-based and detailed atomic potentials: application to the unfolding of the GCN4 leucine zipper. Proteins 35(4):447-52
Marton MJ, et al.  (1998) Drug target validation and identification of secondary drug target effects using DNA microarrays. Nat Med 4(11):1293-301
Spek EJ, et al.  (1998) Surface salt bridges stabilize the GCN4 leucine zipper. Protein Sci 7(11):2431-7
Strauss-Soukup JK and Maher LJ 3rd  (1998) Electrostatic effects in DNA bending by GCN4 mutants. Biochemistry 37(4):1060-6
Zeng X, et al.  (1997) Oligomerization properties of GCN4 leucine zipper e and g position mutants. Protein Sci 6(10):2218-26
Shen L, et al.  (1996) Factors influencing accuracy of computer-built models: a study based on leucine zipper GCN4 structure. Biophys J 70(3):1096-104
Keller W, et al.  (1995) Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition. J Mol Biol 254(4):657-67
Kenar KT, et al.  (1995) A calorimetric characterization of the salt dependence of the stability of the GCN4 leucine zipper. Protein Sci 4(9):1934-8
Okagami M, et al.  (1995) Sequence-specific DNA binding by covalently constrained peptide dimers of the basic leucine zipper protein GCN4. Bioorg Med Chem 3(6):777-84
DeLano WL and Brunger AT  (1994) Helix packing in proteins: prediction and energetic analysis of dimeric, trimeric, and tetrameric GCN4 coiled coil structures. Proteins 20(2):105-23
Nilges M and Brunger AT  (1993) Successful prediction of the coiled coil geometry of the GCN4 leucine zipper domain by simulated annealing: comparison to the X-ray structure. Proteins 15(2):133-46
O'Donoghue SI, et al.  (1993) Determination of the structure of symmetric coiled-coil proteins from NMR data: application of the leucine zipper proteins Jun and GCN4. Protein Eng 6(6):557-64
Seo J and Cohen C  (1993) Pitch diversity in alpha-helical coiled coils. Proteins 15(3):223-34
Thompson KS, et al.  (1993) Thermodynamic characterization of the structural stability of the coiled-coil region of the bZIP transcription factor GCN4. Biochemistry 32(21):5491-6
Pu WT and Struhl K  (1992) Uracil interference, a rapid and general method for defining protein-DNA interactions involving the 5-methyl group of thymines: the GCN4-DNA complex. Nucleic Acids Res 20(4):771-5
Goodman EM and Kim PS  (1991) Periodicity of amide proton exchange rates in a coiled-coil leucine zipper peptide. Biochemistry 30(50):11615-20