PRE9/YGR135W Literature Guide Help

Other names published for PRE9: proteasome core particle subunit alpha 3, YGR135W

PRE9 Literature Curation Summary

Curated References for PRE9: 137

Date of last curation: 2013-05-07

ReferenceOther Genes Addressed
Concannon C and Lahue RS  (2013) The 26S proteasome drives trinucleotide repeat expansions. Nucleic Acids Res ()
Hu J, et al.  (2013) Global analysis of phosphorylation networks in humans. Biochim Biophys Acta ()
Peth A, et al.  (2013) Ubiquitinated proteins activate the proteasomal ATPases by binding to usp14 or uch37 homologs. J Biol Chem 288(11):7781-90
Schreiber A and Peter M  (2013) Substrate recognition in selective autophagy and the ubiquitin-proteasome system. Biochim Biophys Acta ()
Beck F, et al.  (2012) Near-atomic resolution structural model of the yeast 26S proteasome. Proc Natl Acad Sci U S A 109(37):14870-5
Dos Santos SC, et al.  (2012) Yeast toxicogenomics: genome-wide responses to chemical stresses with impact in environmental health, pharmacology, and biotechnology. Front Genet 3():63
Enenkel C  (2012) Using Native Gel Electrophoresis and Phosphofluoroimaging to Analyze GFP-Tagged Proteasomes. Methods Mol Biol 832():339-48
Gallastegui N and Groll M  (2012) Analysing properties of proteasome inhibitors using kinetic and x-ray crystallographic studies. Methods Mol Biol 832():373-90
Ha SW, et al.  (2012) The N-terminal domain of Rpn4 serves as a portable ubiquitin-independent degron and is recognized by specific 19S RP subunits. Biochem Biophys Res Commun 419(2):226-31
Hochstrasser M and Funakoshi M  (2012) Disulfide engineering to map subunit interactions in the proteasome and other macromolecular complexes. Methods Mol Biol 832():349-62
Hodgins-Davis A, et al.  (2012) Abundant gene-by-environment interactions in gene expression reaction norms to copper within Saccharomyces cerevisiae. Genome Biol Evol 4(11):1061-79
Huber EM, et al.  (2012) Immuno- and constitutive proteasome crystal structures reveal differences in substrate and inhibitor specificity. Cell 148(4):727-38
Jacobson T, et al.  (2012) Arsenite interferes with protein folding and triggers formation of protein aggregates in yeast. J Cell Sci 125(Pt 21):5073-83
Kimura A, et al.  (2012) N-myristoylation of the Rpt2 subunit regulates intracellular localization of the yeast 26S proteasome. Biochemistry 51(44):8856-66
Mishto M, et al.  (2012) Driving forces of proteasome-catalyzed peptide splicing in yeast and humans. Mol Cell Proteomics 11(10):1008-23
Saeki Y and Tanaka K  (2012) Assembly and function of the proteasome. Methods Mol Biol 832():315-37
Silva GM, et al.  (2012) Redox control of 20S proteasome gating. Antioxid Redox Signal 16(11):1183-94
Takagi K, et al.  (2012) Structural basis for specific recognition of Rpt1p, an ATPase subunit of 26 S proteasome, by proteasome-dedicated chaperone Hsm3p. J Biol Chem 287(15):12172-82
Tallec BL and Peyroche A  (2012) Using DNA damage sensitivity phenotypes to characterize mutations affecting proteasome function. Methods Mol Biol 832():363-71
Varshavsky A  (2012) Three decades of studies to understand the functions of the ubiquitin family. Methods Mol Biol 832():1-11
Aiken CT, et al.  (2011) Oxidative stress-mediated regulation of proteasome complexes. Mol Cell Proteomics 10(5):R110.006924
Becerra M, et al.  (2011) Comparative transcriptome analysis of yeast strains carrying slt2, rlm1, and pop2 deletions. Genome 54(2):99-109
Bonzanni N, et al.  (2011) The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae. Bioinformatics 27(13):i283-i287
Couttas TA, et al.  (2011) Monitoring cytoplasmic protein complexes with blue native gel electrophoresis and stable isotope labelling with amino acids in cell culture: analysis of changes in the 20S proteasome. Electrophoresis 32(14):1819-23
Gaczynska M and Osmulski PA  (2011) Atomic force microscopy of proteasome assemblies. Methods Mol Biol 736():117-32
Gomez TA, et al.  (2011) Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1. BMC Biol 9(1):33
Hang M and Smith MM  (2011) Genetic Analysis Implicates the Set3/Hos2 Histone Deacetylase in the Deposition and Remodeling of Nucleosomes Containing H2A.Z. Genetics 187(4):1053-66
Hatanaka A, et al.  (2011) Fub1p, a novel protein isolated by boundary screening, binds the proteasome complex. Genes Genet Syst 86(5):305-14
Henderson A, et al.  (2011) Dependence of proteasome processing rate on substrate unfolding. J Biol Chem 286(20):17495-502
Jung PP, et al.  (2011) Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 12(1):331