SWI4/YER111C Literature Guide Help

Other names published for SWI4: ART1, YER111C

SWI4 Literature Curation Summary

Curated References for SWI4: 333

Date of last curation: 2013-05-31

ReferenceOther Genes Addressed
Kim KY, et al.  (2008) Yeast Mpk1 mitogen-activated protein kinase activates transcription through Swi4/Swi6 by a noncatalytic mechanism that requires upstream signal. Mol Cell Biol 28(8):2579-89
Krause SA, et al.  (2008) The synthetic genetic network around PKC1 identifies novel modulators and components of protein kinase C signaling in Saccharomyces cerevisiae. Eukaryot Cell 7(11):1880-7
Lai LC, et al.  (2008) Comparison of the transcriptomic "stress response" evoked by antimycin A and oxygen deprivation in saccharomyces cerevisiae. BMC Genomics 9:627
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Malagon F and Jensen TH  (2008) The T body, a new cytoplasmic RNA granule in Saccharomyces cerevisiae. Mol Cell Biol 28(19):6022-32
Manderson EN, et al.  (2008) A Novel Genetic Screen Implicates Elm1 in the Inactivation of the Yeast Transcription Factor SBF. PLoS ONE 3(1):e1500
Manukyan A, et al.  (2008) Ccr4 Alters Cell Size in Yeast by Modulating the Timing of CLN1 and CLN2 Expression. Genetics 179(1):345-57
Pu S, et al.  (2008) Local coherence in genetic interaction patterns reveals prevalent functional versatility. Bioinformatics 24(20):2376-83
Qi Y, et al.  (2008) Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions. Genome Res 18(12):1991-2004
Rojas M, et al.  (2008) Selective inhibition of yeast regulons by daunorubicin: a transcriptome-wide analysis. BMC Genomics 9:358
Shaner L, et al.  (2008) The Hsp110 protein chaperone Sse1 is required for yeast cell wall integrity and morphogenesis. Curr Genet 54(1):1-11
Wu WS and Li WH  (2008) Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinformatics 9:522
Zhao XM, et al.  (2008) Uncovering signal transduction networks from high-throughput data by integer linear programming. Nucleic Acids Res 36(9):e48
de Bruin RA, et al.  (2008) Stb1 collaborates with other regulators to modulate the G1-specific transcriptional circuit. Mol Cell Biol 28(22):6919-28
Alarcon T and Tindall MJ  (2007) Modelling cell growth and its modulation of the G1/S transition. Bull Math Biol 69(1):197-214
Braunewell S and Bornholdt S  (2007) Superstability of the yeast cell-cycle dynamics: Ensuring causality in the presence of biochemical stochasticity. J Theor Biol 245(4):638-43
Chang EJ, et al.  (2007) Prediction of cyclin-dependent kinase phosphorylation substrates. PLoS One 2(7):e656
Chen G, et al.  (2007) Clustering of genes into regulons using integrated modeling-COGRIM. Genome Biol 8(1):R4
Cook M and Tyers M  (2007) Size control goes global. Curr Opin Biotechnol 18(4):341-50
Elemento O, et al.  (2007) A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types. Mol Cell 28(2):337-50
Ernst J, et al.  (2007) Reconstructing dynamic regulatory maps. Mol Syst Biol 3():74
Fujioka T, et al.  (2007) MpkA-Dependent and -Independent Cell Wall Integrity Signaling in Aspergillus nidulans. Eukaryot Cell 6(8):1497-510
Holloway DT, et al.  (2007) Machine learning for regulatory analysis and transcription factor target prediction in yeast. Syst Synth Biol 1(1):25-46
Larsen P, et al.  (2007) A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments. BMC Bioinformatics 8:317
Lau KY, et al.  (2007) Function constrains network architecture and dynamics: a case study on the yeast cell cycle Boolean network. Phys Rev E Stat Nonlin Soft Matter Phys 75(5 Pt 1):051907
Lu Y, et al.  (2007) Combined analysis reveals a core set of cycling genes. Genome Biol 8(7):R146
Mutiu AI, et al.  (2007) Structure/Function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1. Genetics 177(1):151-66
Truman AW, et al.  (2007) In the yeast heat shock response, Hsf1-directed induction of Hsp90 facilitates the activation of the Slt2 (Mpk1) mitogen-activated protein kinase required for cell integrity. Eukaryot Cell 6(4):744-52
Wang RS, et al.  (2007) Inferring transcriptional regulatory networks from high-throughput data. Bioinformatics 23(22):3056-3064
Bean JM, et al.  (2006) Coherence and timing of cell cycle start examined at single-cell resolution. Mol Cell 21(1):3-14