NCL1/YBL024W Literature Guide Help

Other names published for NCL1: TRM4, YBL024W

NCL1 - Mutants/Phenotypes (23)

ReferenceOther Genes Addressed
Chan CT, et al.  (2012) Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins. Nat Commun 3():937
Dewe JM, et al.  (2012) The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications. RNA 18(10):1886-96
Arias P, et al.  (2011) Genome-wide survey of yeast mutations leading to activation of the yeast cell integrity MAPK pathway: Novel insights into diverse MAPK outcomes. BMC Genomics 12(1):390
Karijolich J and Yu YT  (2011) Converting nonsense codons into sense codons by targeted pseudouridylation. Nature 474(7351):395-8
Wilusz JE, et al.  (2011) tRNAs marked with CCACCA are targeted for degradation. Science 334(6057):817-21
Chan CT, et al.  (2010) A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress. PLoS Genet 6(12):e1001247
Li Z, et al.  (2009) Rational extension of the ribosome biogenesis pathway using network-guided genetics. PLoS Biol 7(10):e1000213
Chernyakov I, et al.  (2008) Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1. Genes Dev 22(10):1369-80
Walbott H, et al.  (2007) Cysteine of sequence motif VI is essential for nucleophilic catalysis by yeast tRNA m5C methyltransferase. RNA 13(7):967-73
Walbott H, et al.  (2007) The Carboxyl-terminal Extension of Yeast tRNA m5C Methyltransferase Enhances the Catalytic Efficiency of the Amino-terminal Domain. J Biol Chem 282(32):23663-71
Alexandrov A, et al.  (2006) Rapid tRNA decay can result from lack of nonessential modifications. Mol Cell 21(1):87-96
Brzezicha B, et al.  (2006) Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the pre-tRNA Leu (CAA). Nucleic Acids Res 34(20):6034-43
Butcher RA, et al.  (2006) Microarray-based method for monitoring yeast overexpression strains reveals small-molecule targets in TOR pathway. Nat Chem Biol 2(2):103-9
Redman KL  (2006) Assembly of Protein-RNA Complexes Using Natural RNA and Mutant Forms of an RNA Cytosine Methyltransferase. Biomacromolecules 7(12):3321-6
Gu W, et al.  (2005) Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAHis with additional m(5)C. Mol Cell Biol 25(18):8191-201
Aye M, et al.  (2004) Host factors that affect Ty3 retrotransposition in Saccharomyces cerevisiae. Genetics 168(3):1159-76
Higgins VJ, et al.  (2002) Phenotypic analysis of gene deletant strains for sensitivity to oxidative stress. Yeast 19(3):203-14
King MY and Redman KL  (2002) RNA methyltransferases utilize two cysteine residues in the formation of 5-methylcytosine. Biochemistry 41(37):11218-25
Lecointe F, et al.  (2002) Lack of pseudouridine 38/39 in the anticodon arm of yeast cytoplasmic tRNA decreases in vivo recoding efficiency. J Biol Chem 277(34):30445-53
de Groot PW, et al.  (2001) A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae. Comp Funct Genomics 2(3):124-42
Malagon F and Aguilera A  (1999) Construction and genetic analysis of S. cerevisiae deletants of six novel ORFs from chromosome II. Yeast 15(10B):955-61
Motorin Y and Grosjean H  (1999) Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme. RNA 5(8):1105-18
Wu P, et al.  (1998) NCL1, a novel gene for a non-essential nuclear protein in Saccharomyces cerevisiae. Gene 220(1-2):109-17