ABF1/YKL112W Literature Guide Help

Other names published for ABF1: BAF1, OBF1, REB2, SBF1, YKL112W

ABF1 - Genomic expression study (14)

ReferenceOther Genes Addressed
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Eser U, et al.  (2011) Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change. Mol Cell 43(4):515-27
Tsankov AM, et al.  (2010) The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8(7):e1000414
Woo DK, et al.  (2009) Multiple pathways of mitochondrial-nuclear communication in yeast: Intergenomic signaling involves ABF1 and affects a different set of genes than retrograde regulation. Biochim Biophys Acta 1789(2):135-45
Choi JK and Kim YJ  (2008) Epigenetic regulation and the variability of gene expression. Nat Genet 40(2):141-7
Jimenez-Marti E and Del Olmo ML  (2008) Addition of ammonia or amino acids to a nitrogen-depleted medium affects gene expression patterns in yeast cells during alcoholic fermentation. FEMS Yeast Res 8(2):245-56
Schlecht U, et al.  (2008) Genome-wide Expression Profiling, In Vivo DNA Binding Analysis, and Probabilistic Motif Prediction Reveal Novel Abf1 Target Genes during Fermentation, Respiration, and Sporulation in Yeast. Mol Biol Cell 19(5):2193-2207
Yarragudi A, et al.  (2007) Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae. Nucleic Acids Res 35(1):193-202
Chua G, et al.  (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
Ho SW, et al.  (2006) Linking DNA-binding proteins to their recognition sequences by using protein microarrays. Proc Natl Acad Sci U S A 103(26):9940-5
Kresnowati MT, et al.  (2006) When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation. Mol Syst Biol 2():49
Miyake T, et al.  (2004) Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae. J Biol Chem 279(33):34865-72
Hieronymus H and Silver PA  (2003) Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat Genet 33(2):155-61
Jelinsky SA and Samson LD  (1999) Global response of Saccharomyces cerevisiae to an alkylating agent. Proc Natl Acad Sci U S A 96(4):1486-91