RAP1/YNL216W Literature Guide 
Other names published for RAP1: GRF1, TBA1, TUF1, YNL216W
RAP1 LITERATURE TOPICS
- Curated Literature
- Genetics/Cell Biology
- Nucleic Acid Information
- Gene Product Information
- Related Genes/Proteins
- Research Aids
- Genome-wide Analysis
- Proteome-wide Analysis
- Other Topics
- Additional Information
RAP1 - Function/Process (99)
| Reference | Other Genes Addressed |
|---|---|
| Fukunaga K, et al. (2012) Subtelomere-binding protein Tbf1 and telomere-binding protein Rap1 collaborate to inhibit localization of the Mre11 complex to DNA ends in budding yeast. Mol Biol Cell 23(2):347-59 |
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| Rossouw D, et al. (2012) Transcriptional regulation and the diversification of metabolism in wine yeast strains. Genetics 190(1):251-61 |
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| Ganapathi M, et al. (2011) Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res 39(6):2032-44 |
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| Iglesias N, et al. (2011) Subtelomeric repetitive elements determine TERRA regulation by Rap1/Rif and Rap1/Sir complexes in yeast. EMBO Rep 12(6):587-93 |
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| Svensson JP, et al. (2011) Genomic phenotyping of the essential and non-essential yeast genome detects novel pathways for alkylation resistance. BMC Syst Biol 5(1):157 |
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| Zeevi D, et al. (2011) Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters. Genome Res 21(12):2114-28 |
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| Bonetti D, et al. (2010) Shelterin-Like Proteins and Yku Inhibit Nucleolytic Processing of Saccharomyces cerevisiae Telomeres. PLoS Genet 6(5):e1000966 |
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| Weber JM and Ehrenhofer-Murray AE (2010) Design of a minimal silencer for the silent mating-type locus HML of Saccharomyces cerevisiae. Nucleic Acids Res 38(22):7991-8000 |
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| Ansari SA, et al. (2009) Mediator complex association with constitutively transcribed genes in yeast. Proc Natl Acad Sci U S A 106(39):16734-9 |
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| Mak HC, et al. (2009) Dynamic reprogramming of transcription factors to and from the subtelomere. Genome Res 19(6):1014-25 |
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| Pelechano V, et al. (2009) Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet 5(8):e1000614 |
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| Zhu X and Gustafsson CM (2009) Distinct differences in chromatin structure at subtelomeric X and Y' elements in budding yeast. PLoS One 4(7):e6363 |
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| Feeser EA and Wolberger C (2008) Structural and functional studies of the Rap1 C-terminus reveal novel separation-of-function mutants. J Mol Biol 380(3):520-31 |
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| Franke J, et al. (2008) Hypermethylation of yeast telomerase RNA by the snRNA and snoRNA methyltransferase Tgs1. J Cell Sci 121(Pt 21):3553-60 |
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| Marcand S, et al. (2008) Multiple pathways inhibit NHEJ at telomeres. Genes Dev 22(9):1153-8 |
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| Tomar RS, et al. (2008) Yeast Rap1 contributes to genomic integrity by activating DNA damage repair genes. EMBO J 27(11):1575-84 |
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| Ward LD and Bussemaker HJ (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71 |
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| Garbett KA, et al. (2007) Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction. Mol Cell Biol 27(1):297-311 |
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| Holloway DT, et al. (2007) Machine learning for regulatory analysis and transcription factor target prediction in yeast. Syst Synth Biol 1(1):25-46 |
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| Kasahara K, et al. (2007) Assembly of Regulatory Factors on rRNA and Ribosomal Protein Genes in Saccharomyces cerevisiae. Mol Cell Biol 27(19):6686-6705 |
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| Negrini S, et al. (2007) DNA breaks are masked by multiple Rap1 binding in yeast: implications for telomere capping and telomerase regulation. Genes Dev 21(3):292-302 |
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| Sabourin M, et al. (2007) Telomerase and Tel1p preferentially associate with short telomeres in S. cerevisiae. Mol Cell 27(4):550-61 |
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| Buck MJ and Lieb JD (2006) A chromatin-mediated mechanism for specification of conditional transcription factor targets. Nat Genet 38(12):1446-51 |
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| Guo X, et al. (2006) Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae. Bioinformatics 22(4):392-9 |
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| Zhao Y, et al. (2006) Fine-structure analysis of ribosomal protein gene transcription. Mol Cell Biol 26(13):4853-62 |
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| Pardo B and Marcand S (2005) Rap1 prevents telomere fusions by nonhomologous end joining. EMBO J 24(17):3117-27 |
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| Trelles-Sticken E, et al. (2005) Set1- and Clb5-deficiencies disclose the differential regulation of centromere and telomere dynamics in Saccharomyces cerevisiae meiosis. J Cell Sci 118(Pt 21):4985-94 |
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| Andrulis ED, et al. (2004) One-hybrid screens at the Saccharomyces cerevisiae HMR locus identify novel transcriptional silencing factors. Genetics 166(1):631-5 |
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| Ben-Aroya S, et al. (2004) The compact chromatin structure of a Ty repeated sequence suppresses recombination hotspot activity in Saccharomyces cerevisiae. Mol Cell 15(2):221-31 |
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| Bernstein BE, et al. (2004) Global nucleosome occupancy in yeast. Genome Biol 5(9):R62 |
