RDN5-2 Literature Guide Help

Other names published for RDN5-2: RDN5

RDN5-2 - DNA/RNA Sequence Features (28)

ReferenceOther Genes Addressed
Stumpferl SW, et al.  (2012) Natural genetic variation in yeast longevity. Genome Res 22(10):1963-73
Ganley AR and Kobayashi T  (2011) Monitoring the rate and dynamics of concerted evolution in the ribosomal DNA repeats of Saccharomyces cerevisiae using experimental evolution. Mol Biol Evol 28(10):2883-91
Kudla G, et al.  (2011) Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc Natl Acad Sci U S A 108(24):10010-5
Davey RP, et al.  (2010) TURNIP: tracking unresolved nucleotide polymorphisms in large hard-to-assemble regions of repetitive DNA sequence. Bioinformatics 26(22):2908-9
Torres-Machorro AL, et al.  (2010) Ribosomal RNA genes in eukaryotic microorganisms: witnesses of phylogeny? FEMS Microbiol Rev 34(1):59-86
James SA, et al.  (2009) Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res 19(4):626-35
Decatur WA and Schnare MN  (2008) Different mechanisms for Pseudouridine formation in yeast 5S and 5.8S rRNAs. Mol Cell Biol 28(10):3089-100
Kiparisov S, et al.  (2005) Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Mol Genet Genomics 274(3):235-47
Lee Y and Nazar RN  (2003) Terminal structure mediates 5 S rRNA stability and integration during ribosome biogenesis. J Biol Chem 278(9):6635-41
Cote CA, et al.  (2002) Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast. RNA 8(6):786-97
Meier A, et al.  (2002) Repair of active and silenced rDNA in yeast: the contributions of photolyase and transcription-couples nucleotide excision repair. J Biol Chem 277(14):11845-52
Redzepovic S, et al.  (2002) Identification and characterization of Saccharomyces cerevisiae and Saccharomyces paradoxus strains isolated from Croatian vineyards. Lett Appl Microbiol 35(4):305-10
Costanzo G, et al.  (2001) RNA polymerase III transcription complexes on chromosomal 5S rRNA genes in vivo: TFIIIB occupancy and promoter opening. Mol Cell Biol 21(9):3166-78
Muth GW, et al.  (2001) pH-dependent conformational flexibility within the ribosomal peptidyl transferase center. RNA 7(10):1403-15
Smith MW, et al.  (2001) Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 21(24):8264-75
Spahn CM, et al.  (2001) Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions. Cell 107(3):373-86
Valente P, et al.  (1999) Sequencing as a tool in yeast molecular taxonomy. Can J Microbiol 45(11):949-58
Johnston M, et al.  (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632 Suppl):87-90
Lee Y, et al.  (1995) In vivo analyses of the internal control region in the 5S rRNA gene from Saccharomyces cerevisiae. Nucleic Acids Res 23(4):634-40
Buttinelli M, et al.  (1993) Multiple nucleosome positioning with unique rotational setting for the Saccharomyces cerevisiae 5S rRNA gene in vitro and in vivo. Proc Natl Acad Sci U S A 90(20):9315-9
Braun BR, et al.  (1992) Topography of transcription factor complexes on the Saccharomyces cerevisiae 5 S RNA gene. J Mol Biol 228(4):1063-77
Yeh LC, et al.  (1992) Yeast 5S rRNA binding to ribosomal protein L1a alters the fluorescence of tryptophan residues lying outside the binding site. Biochimie 74(11):1025-30
Challice JM and Segall J  (1989) Transcription of the 5 S rRNA gene of Saccharomyces cerevisiae requires a promoter element at +1 and a 14-base pair internal control region. J Biol Chem 264(33):20060-7
Brow DA  (1987) In vitro transcripts of a yeast variant 5 S rRNA gene exhibit alterations in 3'-end processing and protein binding. J Biol Chem 262(29):13959-65
Taylor MJ and Segall J  (1985) Characterization of factors and DNA sequences required for accurate transcription of the Saccharomyces cerevisiae 5 S RNA gene. J Biol Chem 260(7):4531-40
McMahon ME, et al.  (1984) Tandemly arranged variant 5S ribosomal RNA genes in the yeast Saccharomyces cerevisiae. Nucleic Acids Res 12(21):8001-16
Lohr D and Ide GI  (1983) In vitro initiation and termination of ribosomal RNA transcription in isolated yeast nuclei. J Biol Chem 258(8):4668-71
Nazar RN  (1979) The ribosomal protein binding site in Saccharomyces cerevisiae ribosomal5 S RNA. A conserved protein binding site in 5 S RNA. J Biol Chem 254(16):7724-9