CYC1/YJR048W Literature Guide Help

Other names published for CYC1: iso-1-cytochrome c, YJR048W

CYC1 - DNA/RNA Sequence Features (80)

ReferenceOther Genes Addressed
Yamanishi M, et al.  (2011) TPS1 terminator increases mRNA and protein yield in a Saccharomyces cerevisiae expression system. Biosci Biotechnol Biochem 75(11):2234-6
Chevtzoff C, et al.  (2010) Reactive oxygen species-mediated regulation of mitochondrial biogenesis in the yeast Saccharomyces cerevisiae. J Biol Chem 285(3):1733-42
Ihrig J, et al.  (2010) Iron Regulation through the Back Door: Iron-Dependent Metabolite Levels Contribute to Transcriptional Adaptation to Iron Deprivation in Saccharomyces cerevisiae. Eukaryot Cell 9(3):460-71
Lee SK, et al.  (2010) Activation of a Poised RNAPII-Dependent Promoter Requires Both SAGA and Mediator. Genetics 184(3):659-72
Bjornsdottir G and Myers LC  (2008) Minimal components of the RNA polymerase II transcription apparatus determine the consensus TATA box. Nucleic Acids Res 36(9):2906-16
Jenks MH, et al.  (2008) Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast. Mol Cell Biol 28(12):3883-93
Wong B, et al.  (2007) Characterization of Z-DNA as a nucleosome-boundary element in yeast Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 104(7):2229-34
Xin X, et al.  (2007) Regulation of the HAP1 gene involves positive actions of histone deacetylases. Biochem Biophys Res Commun 362(1):120-5
Ben-Naim O, et al.  (2006) The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA. Plant J 46(3):462-76
Vyas VK, et al.  (2005) Repressors Nrg1 and Nrg2 regulate a set of stress-responsive genes in Saccharomyces cerevisiae. Eukaryot Cell 4(11):1882-91
Dichtl B and Keller W  (2001) Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor. EMBO J 20(12):3197-209
Faitar SL, et al.  (2001) Promoter-specific shifts in transcription initiation conferred by yeast TFIIB mutations are determined by the sequence in the immediate vicinity of the start sites. Mol Cell Biol 21(14):4427-40
Martens C, et al.  (2001) RNA polymerase II and TBP occupy the repressed CYC1 promoter. Mol Microbiol 40(4):1009-19
Das B, et al.  (2000) The role of nuclear cap binding protein Cbc1p of yeast in mRNA termination and degradation. Mol Cell Biol 20(8):2827-38
Fatica A, et al.  (2000) Yeast snoRNA accumulation relies on a cleavage-dependent/polyadenylation-independent 3'-processing apparatus. EMBO J 19(22):6218-29
Hach A, et al.  (2000) The coiled coil dimerization element of the yeast transcriptional activator Hap1, a Gal4 family member, is dispensable for DNA binding but differentially affects transcriptional activation. J Biol Chem 275(1):248-54
Kabir MA, et al.  (2000) Multiple copies of MRG19 suppress transcription of the GAL1 promoter in a GAL80-dependent manner in Saccharomyces cerevisiae. Mol Gen Genet 262(6):1113-22
Melcher K, et al.  (2000) Zero background yeast reporter plasmids. Gene 247(1-2):53-61
Nait-Kaoudjt R, et al.  (1998) Evidence of an overlap between the two half-sites of UAS1-B/CYC1--a new model for Cyp1p (Hap1p) DNA binding. Eur J Biochem 254(1):111-6
Yagil G, et al.  (1998) DNA unwinding in the CYC1 and DED1 yeast promoters. Gene 225(1-2):153-62
Nait-Kaoudjt R, et al.  (1997) Some DNA targets of the yeast CYP1 transcriptional activator are functionally asymmetric--evidence of two half-sites with different affinities. Eur J Biochem 244(2):301-9
Valens M, et al.  (1997) The sequence of a 54.7 kb fragment of yeast chromosome XV reveals the presence of two tRNAs and 24 new open reading frames. Yeast 13(4):379-90
Vuidepot AL, et al.  (1997) NMR analysis of CYP1(HAP1) DNA binding domain-CYC1 upstream activation sequence interactions: recognition of a CGG trinucleotide and of an additional thymine 5 bp downstream by the zinc cluster and the N-terminal extremity of the protein. Nucleic Acids Res 25(15):3042-50
Ha N, et al.  (1996) Mutations in target DNA elements of yeast HAP1 modulate its transcriptional activity without affecting DNA binding. Nucleic Acids Res 24(8):1453-9
Nacken V, et al.  (1996) Probing the limits of expression levels by varying promoter strength and plasmid copy number in Saccharomyces cerevisiae. Gene 175(1-2):253-60
Tanaka M  (1996) Modulation of promoter occupancy by cooperative DNA binding and activation-domain function is a major determinant of transcriptional regulation by activators in vivo. Proc Natl Acad Sci U S A 93(9):4311-5
Yun DF, et al.  (1996) mRNA sequences influencing translation and the selection of AUG initiator codons in the yeast Saccharomyces cerevisiae. Mol Microbiol 19(6):1225-39
Freire-Picos MA, et al.  (1995) Yeast phylogenetic relationships based on cytochrome c sequences. Microbios 81(326):23-7
Guo Z, et al.  (1995) Redundant 3' end-forming signals for the yeast CYC1 mRNA. Proc Natl Acad Sci U S A 92(10):4211-4
Hull MW, et al.  (1995) RNA polymerase II subunit RPB9 is required for accurate start site selection. Genes Dev 9(4):481-90