TEC1/YBR083W Literature Guide Help

Other names published for TEC1: ROC1, YBR083W

TEC1 - Computational analysis (27)

ReferenceOther Genes Addressed
Houser JR, et al.  (2012) Positive roles for negative regulators in the mating response of yeast. Mol Syst Biol 8():586
Wang L, et al.  (2012) Integrating phosphorylation network with transcriptional network reveals novel functional relationships. PLoS One 7(3):e33160
Contador CA, et al.  (2011) Identification of transcription factors perturbed by the synthesis of high levels of a foreign protein in yeast saccharomyces cerevisiae. Biotechnol Prog 27(4):925-36
Gordan R, et al.  (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Waltermann C and Klipp E  (2010) Signal integration in budding yeast. Biochem Soc Trans 38(5):1257-64
Chen T and Li F  (2009) Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data. Int J Bioinform Res Appl 5(6):625-46
Gordan R, et al.  (2009) Distinguishing direct versus indirect transcription factor-DNA interactions. Genome Res 19(11):2090-100
Hu B, et al.  (2009) Mechanisms and constraints on yeast MAPK signaling specificity. Biophys J 96(12):4755-63
Jothi R, et al.  (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Rensing L and Ruoff P  (2009) How can yeast cells decide between three activated MAP kinase pathways? A model approach. J Theor Biol 257(4):578-87
Chou S, et al.  (2008) Fus3-triggered Tec1 degradation modulates mating transcriptional output during the pheromone response. Mol Syst Biol 4:212
Kundaje A, et al.  (2008) A predictive model of the oxygen and heme regulatory network in yeast. PLoS Comput Biol 4(11):e1000224
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Vinod PK and Venkatesh KV  (2008) A steady state model for the transcriptional regulation of filamentous growth in Saccharomyces cerevisiae. In Silico Biol 8(3-4):207-22
Wu WS and Li WH  (2008) Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinformatics 9:522
Narlikar L, et al.  (2007) A nucleosome-guided map of transcription factor binding sites in yeast. PLoS Comput Biol 3(11):e215
Reddy TE, et al.  (2007) Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes. Nucleic Acids Res 35(3):e20
Sengupta N, et al.  (2007) Crosstalk between cAMP-PKA and MAP kinase pathways is a key regulatory design necessary to regulate FLO11 expression. Biophys Chem 125(1):59-71
Sun W, et al.  (2007) Detection of eQTL modules mediated by activity levels of transcription factors. Bioinformatics 23(17):2290-7
Vinod PK and Venkatesh KV  (2007) Specificity of MAPK signaling towards FLO11 expression is established by crosstalk from cAMP pathway. Syst Synth Biol 1(2):99-108
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Yu H and Gerstein M  (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31
Yu T and Li KC  (2005) Inference of transcriptional regulatory network by two-stage constrained space factor analysis. Bioinformatics 21(21):4033-8
Kyoda K, et al.  (2004) DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants. Bioinformatics 20(16):2662-75
Syeda-Mahmood T  (2003) Clustering time-varying gene expression profiles using scale-space signals. Proc IEEE Comput Soc Bioinform Conf 2():48-56