STE12/YHR084W Literature Guide Help

Other names published for STE12: YHR084W

STE12 - Computational analysis (50)

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ReferenceOther Genes Addressed
Geijer C, et al.  (2012) Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. BMC Genomics 13(1):554
Goncalves JP, et al.  (2012) Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks. PLoS One 7(5):e35977
Hansen L, et al.  (2012) Differences in local genomic context of bound and unbound motifs. Gene 506(1):125-34
Houser JR, et al.  (2012) Positive roles for negative regulators in the mating response of yeast. Mol Syst Biol 8():586
Stojmirovic A and Yu YK  (2012) Information flow in interaction networks II: channels, path lengths, and potentials. J Comput Biol 19(4):379-403
Wang L, et al.  (2012) Integrating phosphorylation network with transcriptional network reveals novel functional relationships. PLoS One 7(3):e33160
Contador CA, et al.  (2011) Identification of transcription factors perturbed by the synthesis of high levels of a foreign protein in yeast saccharomyces cerevisiae. Biotechnol Prog 27(4):925-36
Gordan R, et al.  (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Szczurek E, et al.  (2010) Introducing knowledge into differential expression analysis. J Comput Biol 17(8):953-67
Waltermann C and Klipp E  (2010) Signal integration in budding yeast. Biochem Soc Trans 38(5):1257-64
Wu C, et al.  (2010) Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test. BMC Syst Biol 4():82
Zeng T and Li J  (2010) Maximization of negative correlations in time-course gene expression data for enhancing understanding of molecular pathways. Nucleic Acids Res 38(1):e1
Gordan R, et al.  (2009) Distinguishing direct versus indirect transcription factor-DNA interactions. Genome Res 19(11):2090-100
Halperin Y, et al.  (2009) Allegro: analyzing expression and sequence in concert to discover regulatory programs. Nucleic Acids Res 37(5):1566-79
Hu B, et al.  (2009) Mechanisms and constraints on yeast MAPK signaling specificity. Biophys J 96(12):4755-63
Huang SS and Fraenkel E  (2009) Integrating proteomic, transcriptional, and interactome data reveals hidden components of signaling and regulatory networks. Sci Signal 2(81):ra40
Jothi R, et al.  (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Swamy KB, et al.  (2009) Impact of DNA-binding position variants on yeast gene expression. Nucleic Acids Res 37(21):6991-7001
Tanaka H and Yi TM  (2009) Reverse engineering a signaling network using alternative inputs. PLoS One 4(10):e7622
Chou S, et al.  (2008) Fus3-triggered Tec1 degradation modulates mating transcriptional output during the pheromone response. Mol Syst Biol 4:212
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Vinod PK and Venkatesh KV  (2008) A steady state model for the transcriptional regulation of filamentous growth in Saccharomyces cerevisiae. In Silico Biol 8(3-4):207-22
Wu WS and Li WH  (2008) Identifying gene regulatory modules of heat shock response in yeast. BMC Genomics 9:439
Wu WS and Li WH  (2008) Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinformatics 9:522
Zhao XM, et al.  (2008) Uncovering signal transduction networks from high-throughput data by integer linear programming. Nucleic Acids Res 36(9):e48
Chen G, et al.  (2007) Clustering of genes into regulons using integrated modeling-COGRIM. Genome Biol 8(1):R4
Narlikar L, et al.  (2007) A nucleosome-guided map of transcription factor binding sites in yeast. PLoS Comput Biol 3(11):e215
Reddy TE, et al.  (2007) Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes. Nucleic Acids Res 35(3):e20
Results: 1 - 30 of 50 records
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