RPO21/YDL140C Literature Guide Help

Other names published for RPO21: RPB1, RPB220, SUA8, B220, YDL140C

RPO21 - Computational analysis (22)

ReferenceOther Genes Addressed
Karagiannis J  (2012) Decoding the Informational Properties of the RNA Polymerase II Carboxy Terminal Domain. BMC Res Notes 5(1):241
Schwalb B, et al.  (2012) Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA). Bioinformatics 28(6):884-5
Xie P  (2012) A dynamic model for processive transcription elongation and backtracking long pauses by multisubunit RNA polymerases. Proteins 80(8):2020-34
Li B, et al.  (2011) Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions. BMC Syst Biol 5(1):73
Chin CH, et al.  (2010) A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles. BMC Bioinformatics 11 Suppl 1():S25
Feig M and Burton ZF  (2010) RNA polymerase II flexibility during translocation from normal mode analysis. Proteins 78(2):434-46
Feig M and Burton ZF  (2010) RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation. Biophys J 99(8):2577-86
Lionnet T, et al.  (2010) Nuclear physics: quantitative single-cell approaches to nuclear organization and gene expression. Cold Spring Harb Symp Quant Biol 75():113-26
Looke M, et al.  (2010) Relicensing of transcriptionally inactivated replication origins in budding yeast. J Biol Chem 285(51):40004-11
Rogers C, et al.  (2010) Connecting mutations of the RNA polymerase II C-terminal domain to complex phenotypic changes using combined gene expression and network analyses. PLoS One 5(6):e11386
Hodges C, et al.  (2009) Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II. Science 325(5940):626-8
Hong SW, et al.  (2009) Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome. Proc Natl Acad Sci U S A 106(34):14276-80
Pelechano V, et al.  (2009) Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet 5(8):e1000614
Zhang KX and Ouellette BF  (2009) GAIA: a gram-based interaction analysis tool--an approach for identifying interacting domains in yeast. BMC Bioinformatics 10 Suppl 1:S60
Bourbon HM  (2008) Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex. Nucleic Acids Res 36(12):3993-4008
Toth-Petroczy A, et al.  (2008) Malleable machines in transcription regulation: the mediator complex. PLoS Comput Biol 4(12):e1000243
Chang EJ, et al.  (2007) Prediction of cyclin-dependent kinase phosphorylation substrates. PLoS One 2(7):e656
Huisinga KL and Pugh BF  (2007) A TATA binding protein regulatory network that governs transcription complex assembly. Genome Biol 8(4):R46
Blake WJ, et al.  (2006) Phenotypic consequences of promoter-mediated transcriptional noise. Mol Cell 24(6):853-65
Jothi R, et al.  (2006) Co-evolutionary Analysis of Domains in Interacting Proteins Reveals Insights into Domain-Domain Interactions Mediating Protein-Protein Interactions. J Mol Biol 362(4):861-75
Wu X, et al.  (2006) Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations. Nucleic Acids Res 34(7):2137-50
Chervitz SA, et al.  (1998) Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science 282(5396):2022-8