MSN4/YKL062W Literature Guide Help

Other names published for MSN4: YKL062W

MSN4 - Computational analysis (49)

Results: 1 - 30 of 49 records
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ReferenceOther Genes Addressed
Casamayor A, et al.  (2012) The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. Biochem J 444(1):39-49
Geijer C, et al.  (2012) Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. BMC Genomics 13(1):554
Navlakha S, et al.  (2012) A Network-based Approach for Predicting Missing Pathway Interactions. PLoS Comput Biol 8(8):e1002640
Ames RM and Lovell SC  (2011) Diversification at transcription factor binding sites within a species and the implications for environmental adaptation. Mol Biol Evol 28(12):3331-44
Brohee S, et al.  (2011) Unraveling networks of co-regulated genes on the sole basis of genome sequences. Nucleic Acids Res 39(15):6340-58
Dikicioglu D, et al.  (2011) How yeast re-programmes its transcriptional profile in response to different nutrient impulses. BMC Syst Biol 5(1):148
Ding S and Wang W  (2011) Recipes and mechanisms of cellular reprogramming: a case study on budding yeast Saccharomyces cerevisiae. BMC Syst Biol 5(1):50
Everett LJ, et al.  (2011) Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis. Nucleic Acids Res 39(12):e78
Gordan R, et al.  (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Pelet S, et al.  (2011) Transient activation of the HOG MAPK pathway regulates bimodal gene expression. Science 332(6030):732-5
Rao AR and Pellegrini M  (2011) Regulation of the yeast metabolic cycle by transcription factors with periodic activities. BMC Syst Biol 5(1):160
Thorne TW, et al.  (2011) Prediction of putative protein interactions through evolutionary analysis of osmotic stress response in the model yeast Saccharomyces cerevisae. Fungal Genet Biol 48(5):504-11
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Goh WS, et al.  (2010) Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol 6(1):e1000649
Lee E and Bussemaker HJ  (2010) Identifying the genetic determinants of transcription factor activity. Mol Syst Biol 6():412
Morris RT, et al.  (2010) Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae. Bioinformatics 26(2):168-74
Wang YC and Chen BS  (2010) Integrated cellular network of transcription regulations and protein-protein interactions. BMC Syst Biol 4():20
Jothi R, et al.  (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Liu Y, et al.  (2009) Analysis of Saccharomyces cerevisiae Genome for the Distributions of Stress-Response Elements Potentially Affecting Gene Expression by Transcriptional Interference. In Silico Biol 9(5):379-89
Mak HC, et al.  (2009) Dynamic reprogramming of transcription factors to and from the subtelomere. Genome Res 19(6):1014-25
Ni L, et al.  (2009) Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev 23(11):1351-63
Wang Y, et al.  (2009) Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data. Nucleic Acids Res 37(18):5943-58
Wu WS and Chen BS  (2009) Identifying Stress Transcription Factors Using Gene Expression and TF-Gene Association Data. Bioinform Biol Insights 1():137-45
Janga SC, et al.  (2008) Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes. Proc Natl Acad Sci U S A 105(41):15761-6
Nyswaner KM, et al.  (2008) Chromatin-associated genes protect the yeast genome from ty1 insertional mutagenesis. Genetics 178(1):197-214
Vinod PK, et al.  (2008) Integration of Global Signaling Pathways, cAMP-PKA, MAPK and TOR in the Regulation of FLO11. PLoS ONE 3(2):e1663
Wu WS and Li WH  (2008) Identifying gene regulatory modules of heat shock response in yeast. BMC Genomics 9:439
Yoshikawa K, et al.  (2008) Genome-wide analysis of the effects of location and number of stress response elements on gene expression in Saccharomyces cerevisiae. J Biosci Bioeng 106(5):507-10
Chen G, et al.  (2007) Clustering of genes into regulons using integrated modeling-COGRIM. Genome Biol 8(1):R4
Cheng C, et al.  (2007) Inference of transcription modification in long-live yeast strains from their expression profiles. BMC Genomics 8():219
Results: 1 - 30 of 49 records
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