MSN2/YMR037C Literature Guide Help

Other names published for MSN2: YMR037C

MSN2 LITERATURE TOPICS

MSN2 - Computational analysis (40)

Results: 1 - 30 of 40 records
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ReferenceOther Genes Addressed
Casamayor A, et al.  (2012) The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. Biochem J 444(1):39-49
Geijer C, et al.  (2012) Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. BMC Genomics 13(1):554
Navlakha S, et al.  (2012) A Network-based Approach for Predicting Missing Pathway Interactions. PLoS Comput Biol 8(8):e1002640
Tkach JM, et al.  (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76
Wang L, et al.  (2012) Integrating phosphorylation network with transcriptional network reveals novel functional relationships. PLoS One 7(3):e33160
Ames RM and Lovell SC  (2011) Diversification at transcription factor binding sites within a species and the implications for environmental adaptation. Mol Biol Evol 28(12):3331-44
Brohee S, et al.  (2011) Unraveling networks of co-regulated genes on the sole basis of genome sequences. Nucleic Acids Res 39(15):6340-58
Dikicioglu D, et al.  (2011) How yeast re-programmes its transcriptional profile in response to different nutrient impulses. BMC Syst Biol 5(1):148
Ding S and Wang W  (2011) Recipes and mechanisms of cellular reprogramming: a case study on budding yeast Saccharomyces cerevisiae. BMC Syst Biol 5(1):50
Everett LJ, et al.  (2011) Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis. Nucleic Acids Res 39(12):e78
Gordan R, et al.  (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Pelet S, et al.  (2011) Transient activation of the HOG MAPK pathway regulates bimodal gene expression. Science 332(6030):732-5
Thorne TW, et al.  (2011) Prediction of putative protein interactions through evolutionary analysis of osmotic stress response in the model yeast Saccharomyces cerevisae. Fungal Genet Biol 48(5):504-11
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Wang YC and Chen BS  (2010) Integrated cellular network of transcription regulations and protein-protein interactions. BMC Syst Biol 4():20
Wuster A and Babu MM  (2010) Transcriptional control of the quorum sensing response in yeast. Mol Biosyst 6(1):124-31
Jothi R, et al.  (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Liu Y, et al.  (2009) Analysis of Saccharomyces cerevisiae Genome for the Distributions of Stress-Response Elements Potentially Affecting Gene Expression by Transcriptional Interference. In Silico Biol 9(5):379-89
Ni L, et al.  (2009) Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev 23(11):1351-63
Wang Y, et al.  (2009) Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data. Nucleic Acids Res 37(18):5943-58
Wu WS and Chen BS  (2009) Identifying Stress Transcription Factors Using Gene Expression and TF-Gene Association Data. Bioinform Biol Insights 1():137-45
Boorsma A, et al.  (2008) Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression. PLoS ONE 3(9):e3112
Gonze D, et al.  (2008) Stochastic modelling of nucleocytoplasmic oscillations of the transcription factor Msn2 in yeast. J R Soc Interface 5 Suppl 1:S95-109
Lu CC, et al.  (2008) Extracting transcription factor binding sites from unaligned gene sequences with statistical models. BMC Bioinformatics 9 Suppl 12:S7
Vinod PK, et al.  (2008) Integration of Global Signaling Pathways, cAMP-PKA, MAPK and TOR in the Regulation of FLO11. PLoS ONE 3(2):e1663
Wu WS and Li WH  (2008) Identifying gene regulatory modules of heat shock response in yeast. BMC Genomics 9:439
Yoshikawa K, et al.  (2008) Genome-wide analysis of the effects of location and number of stress response elements on gene expression in Saccharomyces cerevisiae. J Biosci Bioeng 106(5):507-10
Cheng C, et al.  (2007) Inference of transcription modification in long-live yeast strains from their expression profiles. BMC Genomics 8():219
Ernst J, et al.  (2007) Reconstructing dynamic regulatory maps. Mol Syst Biol 3():74
Gat-Viks I and Shamir R  (2007) Refinement and expansion of signaling pathways: The osmotic response network in yeast. Genome Res 17(3):358-67
Results: 1 - 30 of 40 records
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