HTB1/YDR224C Literature Guide Help

Other names published for HTB1: SPT12, YDR224C

HTB1 - Computational analysis (18)

ReferenceOther Genes Addressed
Zou Y, et al.  (2012) Histone modification pattern evolution after yeast gene duplication. BMC Evol Biol 12(1):111
Feng J, et al.  (2010) New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome. BMC Genomics 11():33
Ogawa R, et al.  (2010) Computational prediction of nucleosome positioning by calculating the relative fragment frequency index of nucleosomal sequences. FEBS Lett 584(8):1498-502
On T, et al.  (2010) The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins 78(9):2075-89
Wang J, et al.  (2010) Identifying the combinatorial effects of histone modifications by association rule mining in yeast. Evol Bioinform Online 6():113-31
Choi JK and Kim YJ  (2009) Implications of the nucleosome code in regulatory variation, adaptation and evolution. Epigenetics 4(5):291-5
Marino-Ramirez L, et al.  (2009) Identification of cis-Regulatory Elements in Gene Co-expression Networks Using A-GLAM. Methods Mol Biol 541:1-20
Nguyen Ba AN, et al.  (2009) NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics 10:202
Ponomarev SY, et al.  (2009) Relaxation dynamics of nucleosomal DNA. Phys Chem Chem Phys 11(45):10633-43
Raveh-Sadka T, et al.  (2009) Incorporating nucleosomes into thermodynamic models of transcription regulation. Genome Res 19(8):1480-96
Scipioni A, et al.  (2009) A statistical thermodynamic approach for predicting the sequence-dependent nucleosome positioning along genomes. Biopolymers 91(12):1143-53
Laribee RN, et al.  (2007) CCR4/NOT complex associates with the proteasome and regulates histone methylation. Proc Natl Acad Sci U S A 104(14):5836-41
Larsen P, et al.  (2007) A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments. BMC Bioinformatics 8:317
Peckham HE, et al.  (2007) Nucleosome positioning signals in genomic DNA. Genome Res 17(8):1170-7
Ramaswamy A and Ioshikhes I  (2007) Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone. BMC Struct Biol 7():76
Rowicka M, et al.  (2007) High-resolution timing of cell cycle-regulated gene expression. Proc Natl Acad Sci U S A 104(43):16892-7
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Syeda-Mahmood T  (2003) Clustering time-varying gene expression profiles using scale-space signals. Proc IEEE Comput Soc Bioinform Conf 2():48-56