HTA1/YDR225W Literature Guide Help

Other names published for HTA1: H2A1, SPT11, YDR225W

HTA1 - Computational analysis (21)

ReferenceOther Genes Addressed
Krassovsky K, et al.  (2012) Tripartite organization of centromeric chromatin in budding yeast. Proc Natl Acad Sci U S A 109(1):243-8
Tkach JM, et al.  (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76
Zou Y, et al.  (2012) Histone modification pattern evolution after yeast gene duplication. BMC Evol Biol 12(1):111
Cui XJ, et al.  (2011) Combinatorial patterns of histone modifications in Saccharomyces cerevisiae. Yeast 28(9):683-91
Koenig L and Youn E  (2011) Hierarchical signature clustering for time series microarray data. Adv Exp Med Biol 696():57-65
Belch Y, et al.  (2010) Weakly positioned nucleosomes enhance the transcriptional competency of chromatin. PLoS One 5(9):e12984
Feng J, et al.  (2010) New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome. BMC Genomics 11():33
Ogawa R, et al.  (2010) Computational prediction of nucleosome positioning by calculating the relative fragment frequency index of nucleosomal sequences. FEBS Lett 584(8):1498-502
On T, et al.  (2010) The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins 78(9):2075-89
Wang J, et al.  (2010) Identifying the combinatorial effects of histone modifications by association rule mining in yeast. Evol Bioinform Online 6():113-31
Choi JK and Kim YJ  (2009) Implications of the nucleosome code in regulatory variation, adaptation and evolution. Epigenetics 4(5):291-5
Cui F and Zhurkin VB  (2009) Distinctive sequence patterns in metazoan and yeast nucleosomes: implications for linker histone binding to AT-rich and methylated DNA. Nucleic Acids Res 37(9):2818-29
Marino-Ramirez L, et al.  (2009) Identification of cis-Regulatory Elements in Gene Co-expression Networks Using A-GLAM. Methods Mol Biol 541:1-20
Ponomarev SY, et al.  (2009) Relaxation dynamics of nucleosomal DNA. Phys Chem Chem Phys 11(45):10633-43
Raveh-Sadka T, et al.  (2009) Incorporating nucleosomes into thermodynamic models of transcription regulation. Genome Res 19(8):1480-96
Scipioni A, et al.  (2009) A statistical thermodynamic approach for predicting the sequence-dependent nucleosome positioning along genomes. Biopolymers 91(12):1143-53
Larsen P, et al.  (2007) A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments. BMC Bioinformatics 8:317
Peckham HE, et al.  (2007) Nucleosome positioning signals in genomic DNA. Genome Res 17(8):1170-7
Ramaswamy A and Ioshikhes I  (2007) Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone. BMC Struct Biol 7():76
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Syeda-Mahmood T  (2003) Clustering time-varying gene expression profiles using scale-space signals. Proc IEEE Comput Soc Bioinform Conf 2():48-56