ADR1/YDR216W Literature Guide Help

Other names published for ADR1: YDR216W

ADR1 - Computational analysis (24)

ReferenceOther Genes Addressed
Casamayor A, et al.  (2012) The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. Biochem J 444(1):39-49
Geijer C, et al.  (2012) Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. BMC Genomics 13(1):554
Gordan R, et al.  (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Knijnenburg TA, et al.  (2011) A regression model approach to enable cell morphology correction in high-throughput flow cytometry. Mol Syst Biol 7():531
Rao AR and Pellegrini M  (2011) Regulation of the yeast metabolic cycle by transcription factors with periodic activities. BMC Syst Biol 5(1):160
Ratushny AV, et al.  (2011) Trade-off between Responsiveness and Noise Suppression in Biomolecular System Responses to Environmental Cues. PLoS Comput Biol 7(6):e1002091
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Lee E and Bussemaker HJ  (2010) Identifying the genetic determinants of transcription factor activity. Mol Syst Biol 6():412
Park CY, et al.  (2010) Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components. PLoS Comput Biol 6(11):e1001009
Zeng T and Li J  (2010) Maximization of negative correlations in time-course gene expression data for enhancing understanding of molecular pathways. Nucleic Acids Res 38(1):e1
Jothi R, et al.  (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Wang Y, et al.  (2009) Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data. Nucleic Acids Res 37(18):5943-58
Ratushny AV, et al.  (2008) Control of transcriptional variability by overlapping feed-forward regulatory motifs. Biophys J 95(8):3715-23
Smith JJ, et al.  (2007) Transcriptional responses to fatty acid are coordinated by combinatorial control. Mol Syst Biol 3():115
Chua G, et al.  (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
Galbraith SJ, et al.  (2006) Transcriptome network component analysis with limited microarray data. Bioinformatics 22(15):1886-94
Stanley SM, et al.  (2006) GONOME: measuring correlations between GO terms and genomic positions. BMC Bioinformatics 7():94
Workman CT, et al.  (2006) A systems approach to mapping DNA damage response pathways. Science 312(5776):1054-9
Yu H and Gerstein M  (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31
Siddharthan R, et al.  (2005) PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. PLoS Comput Biol 1(7):e67
Yu T and Li KC  (2005) Inference of transcriptional regulatory network by two-stage constrained space factor analysis. Bioinformatics 21(21):4033-8
Middendorf M, et al.  (2004) Predicting genetic regulatory response using classification. Bioinformatics 20 Suppl 1():i232-40
Xue W, et al.  (2004) Enrichment of transcriptional regulatory sites in non-coding genomic region. Bioinformatics 20(4):569-75
Brinkworth RI, et al.  (2003) Structural basis and prediction of substrate specificity in protein serine/threonine kinases. Proc Natl Acad Sci U S A 100(1):74-9