GAL4/YPL248C Literature Guide Help

Other names published for GAL4: GAL81, YPL248C

GAL4 - Computational analysis (45)

Results: 1 - 30 of 45 records
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ReferenceOther Genes Addressed
Charoensawan V, et al.  (2012) DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes. Mol Cell 47(2):183-92
Grzegorczyk M and Husmeier D  (2012) A non-homogeneous dynamic bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology.LID - 10.1515/1544-6115.1761 [doi]LID - /j/sagmb.2012.11.issue-4/1544-6115.1761/1544-6115.1761.xml [pii] Stat Appl Genet Mol Biol 11(4)
Klarner H, et al.  (2012) Time series dependent analysis of unparametrized Thomas networks. IEEE/ACM Trans Comput Biol Bioinform 9(5):1338-51
Pannala VR, et al.  (2012) Growth-related model of the GAL system in Saccharomyces cerevisiae predicts behaviour of several mutant strains. IET Syst Biol 6(2):44-53
Venturelli OS, et al.  (2012) Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response. Proc Natl Acad Sci U S A 109(48):E3324-33
Vinh NX, et al.  (2012) Issues impacting genetic network reverse engineering algorithm validation using small networks. Biochim Biophys Acta 1824(12):1434-41
di Bernardo D, et al.  (2012) Predicting synthetic gene networks. Methods Mol Biol 813():57-81
Aburatani S  (2011) Application of structure equation modeling for inferring a serial transcriptional regulation in yeast. Gene Regul Syst Bio 5():75-88
Gordan R, et al.  (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Knutson BA and Hahn S  (2011) Domains of Tra1 Important for Activator Recruitment and Transcription Coactivator Functions of SAGA and NuA4 Complexes. Mol Cell Biol 31(4):818-831
Li Z, et al.  (2011) Large-scale dynamic gene regulatory network inference combining differential equation models with local dynamic Bayesian network analysis. Bioinformatics 27(19):2686-91
Marucci L, et al.  (2011) Derivation, identification and validation of a computational model of a novel synthetic regulatory network in yeast. J Math Biol 62(5):685-706
Pannala VR, et al.  (2011) Dynamic analysis of the KlGAL regulatory system in Kluyveromyces lactis: a comparative study with Saccharomyces cerevisiae. Syst Synth Biol 5(1-2):69-85
Phenix H, et al.  (2011) Quantitative epistasis analysis and pathway inference from genetic interaction data. PLoS Comput Biol 7(5):e1002048
Yang R, et al.  (2011) External Control of the GAL Network in S. cerevisiae: A View from Control Theory. PLoS One 6(4):e19353
Kulkarni VV, et al.  (2010) Stability analysis of the GAL regulatory network in Saccharomyces cerevisiae and Kluyveromyces lactis. BMC Bioinformatics 11 Suppl 1():S43
Pannala VR, et al.  (2010) Experimental and steady-state analysis of the GAL regulatory system in Kluyveromyces lactis. FEBS J 277(14):2987-3002
Sharma A and Malakar P  (2010) Structure modeling and comparative genomics for epimerase enzyme (Gal10p). Bioinformation 5(6):266-70
Singh LN and Hannenhalli S  (2010) Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families. Nucleic Acids Res 38(3):738-49
Cantone I, et al.  (2009) A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches. Cell 137(1):172-81
Jothi R, et al.  (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Mak HC, et al.  (2009) Dynamic reprogramming of transcription factors to and from the subtelomere. Genome Res 19(6):1014-25
Marucci L, et al.  (2009) How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch. PLoS One 4(12):e8083
Wang Y, et al.  (2009) Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data. Nucleic Acids Res 37(18):5943-58
Prasad V and Venkatesh KV  (2008) Stochastic analysis of the GAL genetic switch in Saccharomyces cerevisiae: modeling and experiments reveal hierarchy in glucose repression. BMC Syst Biol 2:97
Chen G, et al.  (2007) Clustering of genes into regulons using integrated modeling-COGRIM. Genome Biol 8(1):R4
Morozov AV and Siggia ED  (2007) Connecting protein structure with predictions of regulatory sites. Proc Natl Acad Sci U S A 104(17):7068-73
Roider HG, et al.  (2007) Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics 23(2):134-41
Blake WJ, et al.  (2006) Phenotypic consequences of promoter-mediated transcriptional noise. Mol Cell 24(6):853-65
Guo X, et al.  (2006) Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae. Bioinformatics 22(4):392-9
Results: 1 - 30 of 45 records
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