MBP1/YDL056W Literature Guide Help

Other names published for MBP1: YDL056W

MBP1 - Computational analysis (55)

Results: 31 - 55 of 55 records
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ReferenceOther Genes Addressed
Braunewell S and Bornholdt S  (2007) Superstability of the yeast cell-cycle dynamics: Ensuring causality in the presence of biochemical stochasticity. J Theor Biol 245(4):638-43
Chen G, et al.  (2007) Clustering of genes into regulons using integrated modeling-COGRIM. Genome Biol 8(1):R4
Ernst J, et al.  (2007) Reconstructing dynamic regulatory maps. Mol Syst Biol 3():74
Lau KY, et al.  (2007) Function constrains network architecture and dynamics: a case study on the yeast cell cycle Boolean network. Phys Rev E Stat Nonlin Soft Matter Phys 75(5 Pt 1):051907
Lu Y, et al.  (2007) Combined analysis reveals a core set of cycling genes. Genome Biol 8(7):R146
Wang RS, et al.  (2007) Inferring transcriptional regulatory networks from high-throughput data. Bioinformatics 23(22):3056-3064
Chua G, et al.  (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
Galbraith SJ, et al.  (2006) Transcriptome network component analysis with limited microarray data. Bioinformatics 22(15):1886-94
Hart CE, et al.  (2006) Connectivity in the yeast cell cycle transcription network: inferences from neural networks. PLoS Comput Biol 2(12):e169
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Yu H and Gerstein M  (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31
Yu X, et al.  (2006) Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae. Nucleic Acids Res 34(3):917-27
Hart CE, et al.  (2005) A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data. Nucleic Acids Res 33(8):2580-94
Maraziotis I, et al.  (2005) Gene networks inference from expression data using a recurrent neuro-fuzzy approach. Conf Proc IEEE Eng Med Biol Soc 5:4834-7
Petti AA and Church GM  (2005) A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae. Genome Res 15(9):1298-306
Wang T and Stormo GD  (2005) Identifying the conserved network of cis-regulatory sites of a eukaryotic genome. Proc Natl Acad Sci U S A 102(48):17400-5
Alter O and Golub GH  (2004) Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription. Proc Natl Acad Sci U S A 101(47):16577-82
Kato M, et al.  (2004) Identifying combinatorial regulation of transcription factors and binding motifs. Genome Biol 5(8):R56
Keles S, et al.  (2004) Regulatory motif finding by logic regression. Bioinformatics 20(16):2799-811
Luscombe NM, et al.  (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431(7006):308-12
Nachman I, et al.  (2004) Inferring quantitative models of regulatory networks from expression data. Bioinformatics 20 Suppl 1:I248-I256
Banerjee N and Zhang MQ  (2003) Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Res 31(23):7024-31
Zhu Z, et al.  (2002) Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm. J Mol Biol 318(1):71-81
Wolfsberg TG, et al.  (1999) Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae. Genome Res 9(8):775-92
Wagner A  (1997) A computational genomics approach to the identification of gene networks. Nucleic Acids Res 25(18):3594-604
Results: 31 - 55 of 55 records
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