HHT1/YBR010W Literature Guide Help

Other names published for HHT1: BUR5, SIN2, YBR010W

HHT1 - Computational analysis (32)

Results: 1 - 30 of 32 records
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ReferenceOther Genes Addressed
Fernandez MA, et al.  (2012) Identification of a core set of signature cell cycle genes whose relative order of time to peak expression is conserved across species. Nucleic Acids Res 40(7):2823-32
Zou Y, et al.  (2012) Histone modification pattern evolution after yeast gene duplication. BMC Evol Biol 12(1):111
Cui XJ, et al.  (2011) Combinatorial patterns of histone modifications in Saccharomyces cerevisiae. Yeast 28(9):683-91
De Vos D, et al.  (2011) Progressive methylation of ageing histones by Dot1 functions as a timer. EMBO Rep 12(9):956-62
Dong D, et al.  (2011) Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective. Bioinformatics 27(2):147-52
Knutson BA and Hahn S  (2011) Domains of Tra1 Important for Activator Recruitment and Transcription Coactivator Functions of SAGA and NuA4 Complexes. Mol Cell Biol 31(4):818-831
Radman-Livaja M, et al.  (2011) Patterns and mechanisms of ancestral histone protein inheritance in budding yeast. PLoS Biol 9(6):e1001075
Feng J, et al.  (2010) New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome. BMC Genomics 11():33
Ogawa R, et al.  (2010) Computational prediction of nucleosome positioning by calculating the relative fragment frequency index of nucleosomal sequences. FEBS Lett 584(8):1498-502
On T, et al.  (2010) The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins 78(9):2075-89
Tanaka Y, et al.  (2010) Positional variations among heterogeneous nucleosome maps give dynamical information on chromatin. Chromosoma 119(4):391-404
Wang J, et al.  (2010) Identifying the combinatorial effects of histone modifications by association rule mining in yeast. Evol Bioinform Online 6():113-31
Bermejo R, et al.  (2009) Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription. Cell 138(5):870-84
Choi JK and Kim YJ  (2009) Implications of the nucleosome code in regulatory variation, adaptation and evolution. Epigenetics 4(5):291-5
Dai Z, et al.  (2009) Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications. BMC Genomics 10:304
Gat-Viks I and Vingron M  (2009) Evidence for gene-specific rather than transcription rate-dependent histone H3 exchange in yeast coding regions. PLoS Comput Biol 5(2):e1000282
Jiang C and Pugh BF  (2009) A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome. Genome Biol 10(10):R109
Marino-Ramirez L, et al.  (2009) Identification of cis-Regulatory Elements in Gene Co-expression Networks Using A-GLAM. Methods Mol Biol 541:1-20
Nguyen Ba AN, et al.  (2009) NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics 10:202
Ponomarev SY, et al.  (2009) Relaxation dynamics of nucleosomal DNA. Phys Chem Chem Phys 11(45):10633-43
Raveh-Sadka T, et al.  (2009) Incorporating nucleosomes into thermodynamic models of transcription regulation. Genome Res 19(8):1480-96
Scipioni A, et al.  (2009) A statistical thermodynamic approach for predicting the sequence-dependent nucleosome positioning along genomes. Biopolymers 91(12):1143-53
Nyswaner KM, et al.  (2008) Chromatin-associated genes protect the yeast genome from ty1 insertional mutagenesis. Genetics 178(1):197-214
Laribee RN, et al.  (2007) CCR4/NOT complex associates with the proteasome and regulates histone methylation. Proc Natl Acad Sci U S A 104(14):5836-41
Larsen P, et al.  (2007) A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments. BMC Bioinformatics 8:317
Peckham HE, et al.  (2007) Nucleosome positioning signals in genomic DNA. Genome Res 17(8):1170-7
Ramaswamy A and Ioshikhes I  (2007) Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone. BMC Struct Biol 7():76
Rowicka M, et al.  (2007) High-resolution timing of cell cycle-regulated gene expression. Proc Natl Acad Sci U S A 104(43):16892-7
Guo X, et al.  (2006) Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae. Bioinformatics 22(4):392-9
Wu WS, et al.  (2006) Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinformatics 7(1):421
Results: 1 - 30 of 32 records
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