PRE9/YGR135W Literature Guide Help

Other names published for PRE9: proteasome core particle subunit alpha 3, YGR135W

PRE9 - Additional Literature (95)

ReferenceOther Genes Addressed
Hu J, et al.  (2013) Global analysis of phosphorylation networks in humans. Biochim Biophys Acta ()
Peth A, et al.  (2013) Ubiquitinated proteins activate the proteasomal ATPases by binding to Usp14 or Uch37 homologs. J Biol Chem 288(11):7781-90
Beck F, et al.  (2012) Near-atomic resolution structural model of the yeast 26S proteasome. Proc Natl Acad Sci U S A 109(37):14870-5
Enenkel C  (2012) Using Native Gel Electrophoresis and Phosphofluoroimaging to Analyze GFP-Tagged Proteasomes. Methods Mol Biol 832():339-48
Gallastegui N and Groll M  (2012) Analysing properties of proteasome inhibitors using kinetic and x-ray crystallographic studies. Methods Mol Biol 832():373-90
Ha SW, et al.  (2012) The N-terminal domain of Rpn4 serves as a portable ubiquitin-independent degron and is recognized by specific 19S RP subunits. Biochem Biophys Res Commun 419(2):226-31
Hochstrasser M and Funakoshi M  (2012) Disulfide engineering to map subunit interactions in the proteasome and other macromolecular complexes. Methods Mol Biol 832():349-62
Hodgins-Davis A, et al.  (2012) Abundant gene-by-environment interactions in gene expression reaction norms to copper within Saccharomyces cerevisiae. Genome Biol Evol 4(11):1061-79
Huber EM, et al.  (2012) Immuno- and constitutive proteasome crystal structures reveal differences in substrate and inhibitor specificity. Cell 148(4):727-38
Jacobson T, et al.  (2012) Arsenite interferes with protein folding and triggers formation of protein aggregates in yeast. J Cell Sci 125(Pt 21):5073-83
Kimura A, et al.  (2012) N-myristoylation of the Rpt2 subunit regulates intracellular localization of the yeast 26S proteasome. Biochemistry 51(44):8856-66
Takagi K, et al.  (2012) Structural basis for specific recognition of Rpt1p, an ATPase subunit of 26 S proteasome, by proteasome-dedicated chaperone Hsm3p. J Biol Chem 287(15):12172-82
Tallec BL and Peyroche A  (2012) Using DNA damage sensitivity phenotypes to characterize mutations affecting proteasome function. Methods Mol Biol 832():363-71
Becerra M, et al.  (2011) Comparative transcriptome analysis of yeast strains carrying slt2, rlm1, and pop2 deletions. Genome 54(2):99-109
Bonzanni N, et al.  (2011) The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae. Bioinformatics 27(13):i283-i287
Couttas TA, et al.  (2011) Monitoring cytoplasmic protein complexes with blue native gel electrophoresis and stable isotope labelling with amino acids in cell culture: analysis of changes in the 20S proteasome. Electrophoresis 32(14):1819-23
Gaczynska M and Osmulski PA  (2011) Atomic force microscopy of proteasome assemblies. Methods Mol Biol 736():117-32
Gomez TA, et al.  (2011) Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1. BMC Biol 9(1):33
Henderson A, et al.  (2011) Dependence of proteasome processing rate on substrate unfolding. J Biol Chem 286(20):17495-502
Jung PP, et al.  (2011) Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 12(1):331
Kraut DA and Matouschek A  (2011) Proteasomal degradation from internal sites favors partial proteolysis via remote domain stabilization. ACS Chem Biol 6(10):1087-95
Manogaran AL, et al.  (2011) Prion formation and polyglutamine aggregation are controlled by two classes of genes. PLoS Genet 7(5):e1001386
Park S, et al.  (2011) Structural defects in the regulatory particle-core particle interface of the proteasome induce a novel proteasome stress response. J Biol Chem 286(42):36652-66
Sakata E, et al.  (2011) The catalytic activity of Ubp6 enhances maturation of the proteasomal regulatory particle. Mol Cell 42(5):637-49
Uluisik I, et al.  (2011) Genome-wide identification of genes that play a role in boron stress response in yeast. Genomics 97(2):106-11
Wu S, et al.  (2011) An integrated top-down and bottom-up strategy for characterization of protein isoforms and modifications. Methods Mol Biol 694():291-304
Ziv I, et al.  (2011) A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis. Mol Cell Proteomics 10(5):M111.009753
da Cunha FM, et al.  (2011) Aging and calorie restriction modulate yeast redox state, oxidized protein removal, and the ubiquitin-proteasome system. Free Radic Biol Med 51(3):664-70
Archer CT and Kodadek T  (2010) The hydrophobic patch of ubiquitin is required to protect transactivator-promoter complexes from destabilization by the proteasomal ATPases. Nucleic Acids Res 38(3):789-96
Bhattacharya A, et al.  (2010) Why Dom34 Stimulates Growth of Cells with Defects of 40S Ribosomal Subunit Biosynthesis. Mol Cell Biol 30(23):5562-71