ABF1/YKL112W Literature Guide Help

Other names published for ABF1: BAF1, OBF1, REB2, SBF1, YKL112W

ABF1 - Additional Literature (234)

ReferenceOther Genes Addressed
Cremona CA, et al.  (2012) Extensive DNA damage-induced sumoylation contributes to replication and repair and acts in addition to the mec1 checkpoint. Mol Cell 45(3):422-32
Ribaud V, et al.  (2012) DNA-end capping by the budding yeast transcription factor and subtelomeric binding protein Tbf1. EMBO J 31(1):138-49
Sharon E, et al.  (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol ()
Smith DJ and Whitehouse I  (2012) Intrinsic coupling of lagging-strand synthesis to chromatin assembly.LID - 10.1038/nature10895 [doi] Nature ()
Vohradsky J  (2012) Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes. Nucleic Acids Res 40(15):7096-103
Westman JO, et al.  (2012) Proteomic Analysis of the Increased Stress Tolerance of Saccharomyces cerevisiae Encapsulated in Liquid Core Alginate-Chitosan Capsules. PLoS One 7(11):e49335
Zhang X, et al.  (2012) Functions of Protosilencers in the Formation and Maintenance of Heterochromatin in Saccharomyces cerevisiae. PLoS One 7(5):e37092
Eser U, et al.  (2011) Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change. Mol Cell 43(4):515-27
Gancarz BL, et al.  (2011) Systematic identification of novel, essential host genes affecting bromovirus RNA replication. PLoS One 6(8):e23988
Gordan R, et al.  (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Henikoff JG, et al.  (2011) Epigenome characterization at single base-pair resolution. Proc Natl Acad Sci U S A 108(45):18318-23
Higa CH, et al.  (2011) Constraint-based analysis of gene interactions using restricted boolean networks and time-series data. BMC Proc 5 Suppl 2():S5
Ostapenko D and Solomon MJ  (2011) Anaphase promoting complex-dependent degradation of transcriptional repressors Nrm1 and Yhp1 in Saccharomyces cerevisiae. Mol Biol Cell 22(13):2175-84
Pan J, et al.  (2011) A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation. Cell 144(5):719-31
Perales R, et al.  (2011) Histone occupancy in vivo at the 601 nucleosome binding element is determined by transcriptional history. Mol Cell Biol 31(16):3485-96
Swamy KB, et al.  (2011) Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast. BMC Evol Biol 11(1):150
Tsankov A, et al.  (2011) Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Res 21(11):1851-62
Wang H, et al.  (2011) Yeast cell cycle transcription factors identification by variable selection criteria. Gene 485(2):172-6
Babbitt GA  (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Bhaskar A and Keich U  (2010) Confidently estimating the number of DNA replication origins. Stat Appl Genet Mol Biol 9(1):Article28
Chen X, et al.  (2010) A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data. Bioinformatics 26(12):i334-42
Hu J, et al.  (2010) Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast. Comput Biol Chem 34(2):106-14
On T, et al.  (2010) The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins 78(9):2075-89
Tanaka Y, et al.  (2010) Positional variations among heterogeneous nucleosome maps give dynamical information on chromatin. Chromosoma 119(4):391-404
Tsankov AM, et al.  (2010) The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8(7):e1000414
Weber JM and Ehrenhofer-Murray AE  (2010) Design of a minimal silencer for the silent mating-type locus HML of Saccharomyces cerevisiae. Nucleic Acids Res 38(22):7991-8000
Ay F, et al.  (2009) Scalable steady state analysis of boolean biological regulatory networks. PLoS One 4(12):e7992
Barea F and Bonatto D  (2009) Aging defined by a chronologic-replicative protein network in Saccharomyces cerevisiae: an interactome analysis. Mech Ageing Dev 130(7):444-60
Chen T and Li F  (2009) Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data. Int J Bioinform Res Appl 5(6):625-46
Gordan R, et al.  (2009) Distinguishing direct versus indirect transcription factor-DNA interactions. Genome Res 19(11):2090-100