VDE Literature Guide Help

Other names published for VDE: YDL184w-a, VDE1, YDL185W2, PI-SceI

VDE Literature Curation Summary

Curated References for VDE: 78

Date of last curation: 2013-01-28

Results: 1 - 30 of 78 records
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ReferenceOther Genes Addressed
Barzel A, et al.  (2011) Native homing endonucleases can target conserved genes in humans and in animal models. Nucleic Acids Res 39(15):6646-59
Anraku Y and Satow Y  (2009) Reflections on protein splicing: structures, functions and mechanisms. Proc Jpn Acad Ser B Phys Biol Sci 85(9):409-21
Fukuda T, et al.  (2008) Targeted induction of meiotic double-strand breaks reveals chromosomal domain-dependent regulation of Spo11 and interactions among potential sites of meiotic recombination. Nucleic Acids Res 36(3):984-97
Hiraishi H, et al.  (2008) Transcriptional regulation of Saccharomyces cerevisiae CYS3 encoding cystathionine gamma-lyase. Curr Genet 53(4):225-34
Senejani AG and Gogarten JP  (2007) Structural stability and endonuclease activity of a PI-SceI GFP-fusion protein. Int J Biol Sci 3(4):205-11
Bakhrat A, et al.  (2006) Nuclear import of ho endonuclease utilizes two nuclear localization signals and four importins of the ribosomal import system. J Biol Chem 281(18):12218-26
Brenzel S, et al.  (2006) Engineering artificially split inteins for applications in protein chemistry: biochemical characterization of the split Ssp DnaB intein and comparison to the split Sce VMA intein. Biochemistry 45(6):1571-8
Butler MI, et al.  (2006) The distribution and evolutionary history of the PRP8 intein. BMC Evol Biol 6():42
Fukuda T and Ohya Y  (2006) Recruitment of RecA homologs Dmc1p and Rad51p to the double-strand break repair site initiated by meiosis-specific endonuclease VDE (PI-SceI). Mol Genet Genomics 275(2):204-14
Fukuda T, et al.  (2006) Investigation of the mechanism of meiotic DNA cleavage by VMA1-derived endonuclease uncovers a meiotic alteration in chromatin structure around the target site. Eukaryot Cell 5(6):981-90
Gogarten JP and Hilario E  (2006) Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements. BMC Evol Biol 6():94
Tagwerker C, et al.  (2006) A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linking. Mol Cell Proteomics 5(4):737-48
Anraku Y, et al.  (2005) Protein splicing: its discovery and structural insight into novel chemical mechanisms. IUBMB Life 57(8):563-74
Butler MI, et al.  (2005) Two new fungal inteins. Yeast 22(6):493-501
Fabre E, et al.  (2005) Comparative genomics in hemiascomycete yeasts: evolution of sex, silencing, and subtelomeres. Mol Biol Evol 22(4):856-73
Koufopanou V and Burt A  (2005) Degeneration and domestication of a selfish gene in yeast: molecular evolution versus site-directed mutagenesis. Mol Biol Evol 22(7):1535-8
Srikanth CV, et al.  (2005) Multiple cis-regulatory elements and the yeast sulphur regulatory network are required for the regulation of the yeast glutathione transporter, Hgt1p. Curr Genet 47(6):345-58
Bakhrat A, et al.  (2004) Homology modeling and mutational analysis of Ho endonuclease of yeast. Genetics 166(2):721-8
Fukuda T, et al.  (2004) Molecular mechanism of VDE-initiated intein homing in yeast nuclear genome. Adv Biophys 38:215-32
Fukuda T, et al.  (2004) Molecular mechanism of vde-initiated intein homing in yeast nuclear genome. Adv Biophys 38(Complete):215-232
Mizutani R, et al.  (2004) Protein splicing of yeast VMA1-derived endonuclease via thiazolidine intermediates. J Synchrotron Radiat 11(Pt 1):109-12
Noel AJ, et al.  (2004) DNA recognition by the homing endonuclease PI-SceI involves a divalent metal ion cofactor-induced conformational change. J Biol Chem 279(8):6794-804
Posey KL, et al.  (2004) Evolution of divergent DNA recognition specificities in VDE homing endonucleases from two yeast species. Nucleic Acids Res 32(13):3947-56
Steuer S, et al.  (2004) Chimeras of the homing endonuclease PI-SceI and the homologous Candida tropicalis intein: a study to explore the possibility of exchanging DNA-binding modules to obtain highly specific endonucleases with altered specificity. Chembiochem 5(2):206-13
Zeidler MP, et al.  (2004) Temperature-sensitive control of protein activity by conditionally splicing inteins. Nat Biotechnol 22(7):871-6
Fukuda T, et al.  (2003) VDE-initiated intein homing in Saccharomyces cerevisiae proceeds in a meiotic recombination-like manner. Genes Cells 8(7):587-602
Gimble FS, et al.  (2003) Assessing the plasticity of DNA target site recognition of the PI-SceI homing endonuclease using a bacterial two-hybrid selection system. J Mol Biol 334(5):993-1008
Miyake T, et al.  (2003) Involvement of the VDE homing endonuclease and rapamycin in regulation of the Saccharomyces cerevisiae GSH11 gene encoding the high affinity glutathione transporter. J Biol Chem 278(41):39632-6
Nagai Y, et al.  (2003) Karyopherin-mediated nuclear import of the homing endonuclease VMA1-derived endonuclease is required for self-propagation of the coding region. Mol Cell Biol 23(5):1726-36
Okuda Y, et al.  (2003) Occurrence, horizontal transfer and degeneration of VDE intein family in Saccharomycete yeasts. Yeast 20(7):563-73
Results: 1 - 30 of 78 records
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