Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
23 |
7.8% |
| Arg[R] |
25 |
8.4% |
| Asn[N] |
14 |
4.7% |
| Asp[D] |
20 |
6.8% |
| Cys[C] |
2 |
0.7% |
| Gln[Q] |
10 |
3.4% |
| Glu[E] |
22 |
7.4% |
| Gly[G] |
11 |
3.7% |
| His[H] |
1 |
0.3% |
| Ile[I] |
17 |
5.7% |
| Leu[L] |
28 |
9.5% |
| Lys[K] |
22 |
7.4% |
| Met[M] |
10 |
3.4% |
| Phe[F] |
6 |
2.0% |
| Pro[P] |
15 |
5.1% |
| Ser[S] |
25 |
8.4% |
| Thr[T] |
19 |
6.4% |
| Trp[W] |
1 |
0.3% |
| Tyr[Y] |
5 |
1.7% |
| Val[V] |
20 |
6.8% |
| Total Length |
296 |
|
| Instability index (II) |
55.57 |
| This classifies the protein as unstable |
|
| Carbon |
1437 |
| Hydrogen |
2386 |
| Nitrogen |
420 |
| Oxygen |
454 |
| Sulfur |
12 |
| Total number of atoms |
4709 |
| Formula = C1437H2386N420O454S12 |
|
| mammalian reticulocytes (in vitro) |
30 hours |
|
| assuming ALL Cys residues appear as half cystines |
13075 |
| assuming NO Cys residues appear as half cystines |
12950 |
|
|
| Codon Bias |
0.056 |
| Codon Adaptation Index |
0.106 |
| Frequency of Optimal Codons |
0.425 |
| Hydropathicity of Protein |
-0.515 |
| Aromaticity Score |
0.041 |
|
