Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
9 |
5.9% |
| Arg[R] |
1 |
0.7% |
| Asn[N] |
7 |
4.6% |
| Asp[D] |
2 |
1.3% |
| Cys[C] |
4 |
2.6% |
| Gln[Q] |
0 |
0.0% |
| Glu[E] |
4 |
2.6% |
| Gly[G] |
4 |
2.6% |
| His[H] |
0 |
0.0% |
| Ile[I] |
10 |
6.5% |
| Leu[L] |
24 |
15.7% |
| Lys[K] |
9 |
5.9% |
| Met[M] |
2 |
1.3% |
| Phe[F] |
8 |
5.2% |
| Pro[P] |
17 |
11.1% |
| Ser[S] |
30 |
19.6% |
| Thr[T] |
8 |
5.2% |
| Trp[W] |
3 |
2.0% |
| Tyr[Y] |
2 |
1.3% |
| Val[V] |
9 |
5.9% |
| Total Length |
153 |
|
| Instability index (II) |
45.22 |
| This classifies the protein as unstable |
|
| Carbon |
752 |
| Hydrogen |
1197 |
| Nitrogen |
175 |
| Oxygen |
213 |
| Sulfur |
6 |
| Total number of atoms |
2343 |
| Formula = C752H1197N175O213S6 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
19730 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
19480 M-1 cm-1 |
| assuming all Cys residues are reduced |
19480 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
19730 M-1 cm-1 |
|
|
| Codon Bias |
-0.063 |
| Codon Adaptation Index |
0.074 |
| Frequency of Optimal Codons |
0.331 |
| Hydropathicity of Protein |
0.507 |
| Aromaticity Score |
0.085 |
|
