Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
29 |
2.6% |
| Arg[R] |
53 |
4.8% |
| Asn[N] |
99 |
9.0% |
| Asp[D] |
71 |
6.4% |
| Cys[C] |
21 |
1.9% |
| Gln[Q] |
38 |
3.4% |
| Glu[E] |
81 |
7.3% |
| Gly[G] |
42 |
3.8% |
| His[H] |
30 |
2.7% |
| Ile[I] |
103 |
9.3% |
| Leu[L] |
80 |
7.2% |
| Lys[K] |
106 |
9.6% |
| Met[M] |
18 |
1.6% |
| Phe[F] |
33 |
3.0% |
| Pro[P] |
32 |
2.9% |
| Ser[S] |
91 |
8.2% |
| Thr[T] |
82 |
7.4% |
| Trp[W] |
7 |
0.6% |
| Tyr[Y] |
39 |
3.5% |
| Val[V] |
49 |
4.4% |
| Total Length |
1104 |
|
| Instability index (II) |
41.36 |
| This classifies the protein as unstable |
|
| Carbon |
5562 |
| Hydrogen |
8903 |
| Nitrogen |
1573 |
| Oxygen |
1758 |
| Sulfur |
39 |
| Total number of atoms |
17835 |
| Formula = C5562H8903N1573O1758S39 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
97860 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
96610 M-1 cm-1 |
| assuming all Cys residues are reduced |
96610 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
97860 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
