Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
79 |
4.5% |
| Arg[R] |
74 |
4.2% |
| Asn[N] |
134 |
7.6% |
| Asp[D] |
113 |
6.4% |
| Cys[C] |
15 |
0.8% |
| Gln[Q] |
84 |
4.7% |
| Glu[E] |
87 |
4.9% |
| Gly[G] |
61 |
3.4% |
| His[H] |
65 |
3.7% |
| Ile[I] |
127 |
7.2% |
| Leu[L] |
152 |
8.6% |
| Lys[K] |
134 |
7.6% |
| Met[M] |
31 |
1.8% |
| Phe[F] |
49 |
2.8% |
| Pro[P] |
98 |
5.5% |
| Ser[S] |
163 |
9.2% |
| Thr[T] |
136 |
7.7% |
| Trp[W] |
15 |
0.8% |
| Tyr[Y] |
82 |
4.6% |
| Val[V] |
71 |
4.0% |
| Total Length |
1770 |
|
| Instability index (II) |
46.05 |
| This classifies the protein as unstable |
|
| Carbon |
8936 |
| Hydrogen |
14025 |
| Nitrogen |
2489 |
| Oxygen |
2770 |
| Sulfur |
46 |
| Total number of atoms |
28266 |
| Formula = C8936H14025N2489O2770S46 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
205555 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
204680 M-1 cm-1 |
| assuming all Cys residues are reduced |
204680 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
205555 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
