Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
81 |
4.6% |
| Arg[R] |
70 |
4.0% |
| Asn[N] |
129 |
7.3% |
| Asp[D] |
103 |
5.9% |
| Cys[C] |
14 |
0.8% |
| Gln[Q] |
73 |
4.2% |
| Glu[E] |
87 |
5.0% |
| Gly[G] |
68 |
3.9% |
| His[H] |
63 |
3.6% |
| Ile[I] |
129 |
7.3% |
| Leu[L] |
140 |
8.0% |
| Lys[K] |
129 |
7.3% |
| Met[M] |
31 |
1.8% |
| Phe[F] |
52 |
3.0% |
| Pro[P] |
115 |
6.5% |
| Ser[S] |
177 |
10.1% |
| Thr[T] |
134 |
7.6% |
| Trp[W] |
14 |
0.8% |
| Tyr[Y] |
75 |
4.3% |
| Val[V] |
72 |
4.1% |
| Total Length |
1756 |
|
| Instability index (II) |
47.19 |
| This classifies the protein as unstable |
|
| Carbon |
8789 |
| Hydrogen |
13789 |
| Nitrogen |
2437 |
| Oxygen |
2725 |
| Sulfur |
45 |
| Total number of atoms |
27785 |
| Formula = C8789H13789N2437O2725S45 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
189625 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
188750 M-1 cm-1 |
| assuming all Cys residues are reduced |
188750 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
189625 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
